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The map label for this gene is fdhD [H]

Identifier: 167622040

GI number: 167622040

Start: 111251

End: 112093

Strand: Reverse

Name: fdhD [H]

Synonym: Shal_0099

Alternate gene names: 167622040

Gene position: 112093-111251 (Counterclockwise)

Preceding gene: 167622062

Following gene: 167622039

Centisome position: 2.14

GC content: 45.31

Gene sequence:

>843_bases
ATGATGGGTCATATGACAGCATACAAAAGCAATCCAACGTTAATTAAAACCAACACCGACGTCCCTCTCACGATTGCGGT
AACCGCCATTAATGAGAATGGCGAAAAAGTGGATAAGTTCATTGCATGCGAGCGCCCCCTCACCGTCTATTTAAACTGGC
AGCCGATCGTGACCTTAATGACACTCGGCGCACGCGCGGAAGCGTTGTCATTGGGCTATCTTAAAAACCAAGGGTTTATC
TCCGATATCAACAAGCTTGAGTCCGTTATTGTCGATTGGGACGTAAACTCGGCTGCCATTATTACCAATGAAAAAATTGA
AAATTTAGATGAAAAGTTATCAGAAAAAACCGTTACCACTGGCTGTGGTCAAGGCACGGTTTACGGCGACTTTATGACCG
GCCTCGATGATATTGTTCTACCGACGCCGCAGTTGAAGCAGAGCATGATCTACAGCCTGCTAAAAAATATCAGTGCCTAT
AATGAAACCTACAAAAATGCAGGTGCAGTGCATGGTTGCGGCTTGTGTAAAGATGATCAAATTGTTGGTTTTGTTGAAGA
TGTTGGCCGTCACAACGCTGTTGATACCCTAGCTGGTGAGATGTGGCTAAATCAGGACTCAGGTAACGATAAGCTATTTT
ATACCACGGGTCGCTTAACCTCAGAGATGGTGATTAAGGTCGCTAAGATGGGGATCCCGGTGGTGTTATCACGCAGCGGC
GCAACCCAGATGGGGCTTGAGCTGGCACAAAAGTTAGGGATTACCATGATTGCTCGTGCTAAAGGTCGTCACTTCTTAAT
TTATAACGGTGCAGAGAACGTTGAATTTGATGCACTTTCTTAA

Upstream 100 bases:

>100_bases
CGACCCAGCCCCGATAAATGTGATCTACTACTAATTTTACCCCCTATAAAATTGGGTACAGATATTGCTTAGCACTAGGT
GCAATTATTTCCTTTAACAG

Downstream 100 bases:

>100_bases
GCCAATACCCCTAATATTATCGATAAAATGCGTGACAAGGAATAATAATGACTGAGCCGACTGACCTGATCTATATGAGT
GCCAAACAGGTATCTGAGTA

Product: formate dehydrogenase subunit FdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MMGHMTAYKSNPTLIKTNTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAIITNEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIVLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCKDDQIVGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENVEFDALS

Sequences:

>Translated_280_residues
MMGHMTAYKSNPTLIKTNTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAIITNEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIVLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCKDDQIVGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENVEFDALS
>Mature_280_residues
MMGHMTAYKSNPTLIKTNTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLMTLGARAEALSLGYLKNQGFI
SDINKLESVIVDWDVNSAAIITNEKIENLDEKLSEKTVTTGCGQGTVYGDFMTGLDDIVLPTPQLKQSMIYSLLKNISAY
NETYKNAGAVHGCGLCKDDQIVGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENVEFDALS

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=244, Percent_Identity=23.7704918032787, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30595; Mature: 30595

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGHMTAYKSNPTLIKTNTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLM
CCCCCEEECCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHH
TLGARAEALSLGYLKNQGFISDINKLESVIVDWDVNSAAIITNEKIENLDEKLSEKTVTT
HCCCCHHHEEEEEECCCCHHHHHHHHHHEEEEECCCCEEEEECHHHHHHHHHHHHHHEEC
GCGQGTVYGDFMTGLDDIVLPTPQLKQSMIYSLLKNISAYNETYKNAGAVHGCGLCKDDQ
CCCCCCEEEHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IVGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
EEEHHHHHCCCCHHHHHHHHHEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCC
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENVEFDALS
CHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCCEEECCC
>Mature Secondary Structure
MMGHMTAYKSNPTLIKTNTDVPLTIAVTAINENGEKVDKFIACERPLTVYLNWQPIVTLM
CCCCCEEECCCCEEEEECCCCCEEEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHH
TLGARAEALSLGYLKNQGFISDINKLESVIVDWDVNSAAIITNEKIENLDEKLSEKTVTT
HCCCCHHHEEEEEECCCCHHHHHHHHHHEEEEECCCCEEEEECHHHHHHHHHHHHHHEEC
GCGQGTVYGDFMTGLDDIVLPTPQLKQSMIYSLLKNISAYNETYKNAGAVHGCGLCKDDQ
CCCCCCEEEHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
IVGFVEDVGRHNAVDTLAGEMWLNQDSGNDKLFYTTGRLTSEMVIKVAKMGIPVVLSRSG
EEEHHHHHCCCCHHHHHHHHHEEECCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEECCC
ATQMGLELAQKLGITMIARAKGRHFLIYNGAENVEFDALS
CHHHHHHHHHHCCEEEEEECCCCEEEEECCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA