Click here to switch to the map view.

The map label for this gene is ctpA [H]

Identifier: 167621982

GI number: 167621982

Start: 49225

End: 50430

Strand: Reverse

Name: ctpA [H]

Synonym: Shal_0041

Alternate gene names: 167621982

Gene position: 50430-49225 (Counterclockwise)

Preceding gene: 167621983

Following gene: 167621981

Centisome position: 0.96

GC content: 43.78

Gene sequence:

>1206_bases
ATGTCACAGTGCATTCGTTACTTTTGCTGTCTTGCAGTGGGGTTAGCATTAGGGTTATCGGTTACCCTATCCGGACAAGA
ACACACCCAAGAATATAAGTCTCACTTAAGTTACCCAGTGCTTCTCGATATCATCGACACTGTAGAGACCTATTACGTAC
AAAAATTCACAGAAGAGGAACTTATAGAGGCTGCCATCGAAGGCATTTTCAATAAGCTCGATCCCTACTCAAGCTTCCTA
GATAAACAAACCTTTACCAGTATGCAAGAGCTCAACAGTGGTGAATACTTCGGTTTTGGTGTTGAAATAGCGACTGATAA
CGACCAAATTACCATAGTTACGCCTTTCGCAGAGTCACCTGCAGAAGCGGCTGGGATTAAACCGGGTGACCGAGTCATCA
AACTCAATAAACAACGAGTTACCGCAGAGAAACTAGAGAGTATTCTCAATGAGATCAAGCAGCATAGCTTAGATAACCAG
CCCATTGAACTTGAGATGGTGAGAGCCAACTCAGATGTACACTACTCTGTTACCATCAGTCCGAGCCTTATCGCAATAAA
CTCTGTCGAGGCCGAGATCCTCGACAATCAGATTGGCTATATCCGTCTTTCGAGTTTTCAAGAGAATACCACTCAAGAGC
TTGTCAAACAGCTATCAGCTTGGCAATCAGAGAAGCTAAACGGCATTATTCTTGACCTTAGAAATAACCCTGGAGGGCTA
CTAGACCAAGCAATTACCGTTGCCGACATATTCCTCGACAAGGGACGGATCGTGGCGACTGAGGGGCGCTTCTTCGATGC
AAATTCTGACTATTACGCCTCACCGCAAACTATGGCAACTAACATTCCGCTATCGGTACTGATAAATAAAGGCTCTGCGT
CTGCATCTGAAGTGCTAGCAGCAGCCTTACAAGAAAATGGTCGAGCCAAGTTAATCGGCCAAACTAGCTTTGGCAAGGGC
ACCATACAAAGTCTTATTCCGACCCTGATGGATGGCAATGCCATTAAGCTAACAATAGCCAAATACACGACACCAAACGG
TAAAGACATTAACTCGAAAGGTATTGAACCAGATATAAAAATCGAACTAGAAGCTGTATCAGATGAGGAAAGTATGCCTA
TAATCGAAAAAAATTCACTCCGTGAGTCTGTTGCTCAAGATAAATTGGTCAGCTCGGCTATAGCATGGATTCAAGCAGAA
AAATAA

Upstream 100 bases:

>100_bases
TGGCCTATACTTTGAAGTAAGGCACAAGGGGCAAGCTGTCGATCCTGCAAGGTATTGCAAACGTTAGACCATATAACCCC
TTAATATATGAGGGGTTAAT

Downstream 100 bases:

>100_bases
TAACCTGTGCGCTACTTTCTATTATTCATCTTTTTATTGTTACCAAGCTCGAGTGTATTCGCCAGCAAAATGGCCATCAT
TATTGATGATCTCGGATATC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSQCIRYFCCLAVGLALGLSVTLSGQEHTQEYKSHLSYPVLLDIIDTVETYYVQKFTEEELIEAAIEGIFNKLDPYSSFL
DKQTFTSMQELNSGEYFGFGVEIATDNDQITIVTPFAESPAEAAGIKPGDRVIKLNKQRVTAEKLESILNEIKQHSLDNQ
PIELEMVRANSDVHYSVTISPSLIAINSVEAEILDNQIGYIRLSSFQENTTQELVKQLSAWQSEKLNGIILDLRNNPGGL
LDQAITVADIFLDKGRIVATEGRFFDANSDYYASPQTMATNIPLSVLINKGSASASEVLAAALQENGRAKLIGQTSFGKG
TIQSLIPTLMDGNAIKLTIAKYTTPNGKDINSKGIEPDIKIELEAVSDEESMPIIEKNSLRESVAQDKLVSSAIAWIQAE
K

Sequences:

>Translated_401_residues
MSQCIRYFCCLAVGLALGLSVTLSGQEHTQEYKSHLSYPVLLDIIDTVETYYVQKFTEEELIEAAIEGIFNKLDPYSSFL
DKQTFTSMQELNSGEYFGFGVEIATDNDQITIVTPFAESPAEAAGIKPGDRVIKLNKQRVTAEKLESILNEIKQHSLDNQ
PIELEMVRANSDVHYSVTISPSLIAINSVEAEILDNQIGYIRLSSFQENTTQELVKQLSAWQSEKLNGIILDLRNNPGGL
LDQAITVADIFLDKGRIVATEGRFFDANSDYYASPQTMATNIPLSVLINKGSASASEVLAAALQENGRAKLIGQTSFGKG
TIQSLIPTLMDGNAIKLTIAKYTTPNGKDINSKGIEPDIKIELEAVSDEESMPIIEKNSLRESVAQDKLVSSAIAWIQAE
K
>Mature_400_residues
SQCIRYFCCLAVGLALGLSVTLSGQEHTQEYKSHLSYPVLLDIIDTVETYYVQKFTEEELIEAAIEGIFNKLDPYSSFLD
KQTFTSMQELNSGEYFGFGVEIATDNDQITIVTPFAESPAEAAGIKPGDRVIKLNKQRVTAEKLESILNEIKQHSLDNQP
IELEMVRANSDVHYSVTISPSLIAINSVEAEILDNQIGYIRLSSFQENTTQELVKQLSAWQSEKLNGIILDLRNNPGGLL
DQAITVADIFLDKGRIVATEGRFFDANSDYYASPQTMATNIPLSVLINKGSASASEVLAAALQENGRAKLIGQTSFGKGT
IQSLIPTLMDGNAIKLTIAKYTTPNGKDINSKGIEPDIKIELEAVSDEESMPIIEKNSLRESVAQDKLVSSAIAWIQAEK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=324, Percent_Identity=25.9259259259259, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 44039; Mature: 43908

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQCIRYFCCLAVGLALGLSVTLSGQEHTQEYKSHLSYPVLLDIIDTVETYYVQKFTEEE
CHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LIEAAIEGIFNKLDPYSSFLDKQTFTSMQELNSGEYFGFGVEIATDNDQITIVTPFAESP
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCC
AEAAGIKPGDRVIKLNKQRVTAEKLESILNEIKQHSLDNQPIELEMVRANSDVHYSVTIS
HHHCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEC
PSLIAINSVEAEILDNQIGYIRLSSFQENTTQELVKQLSAWQSEKLNGIILDLRNNPGGL
CCEEEEECCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
LDQAITVADIFLDKGRIVATEGRFFDANSDYYASPQTMATNIPLSVLINKGSASASEVLA
HHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHH
AALQENGRAKLIGQTSFGKGTIQSLIPTLMDGNAIKLTIAKYTTPNGKDINSKGIEPDIK
HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
IELEAVSDEESMPIIEKNSLRESVAQDKLVSSAIAWIQAEK
EEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SQCIRYFCCLAVGLALGLSVTLSGQEHTQEYKSHLSYPVLLDIIDTVETYYVQKFTEEE
HHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
LIEAAIEGIFNKLDPYSSFLDKQTFTSMQELNSGEYFGFGVEIATDNDQITIVTPFAESP
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCC
AEAAGIKPGDRVIKLNKQRVTAEKLESILNEIKQHSLDNQPIELEMVRANSDVHYSVTIS
HHHCCCCCCCEEEEECHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEC
PSLIAINSVEAEILDNQIGYIRLSSFQENTTQELVKQLSAWQSEKLNGIILDLRNNPGGL
CCEEEEECCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH
LDQAITVADIFLDKGRIVATEGRFFDANSDYYASPQTMATNIPLSVLINKGSASASEVLA
HHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHH
AALQENGRAKLIGQTSFGKGTIQSLIPTLMDGNAIKLTIAKYTTPNGKDINSKGIEPDIK
HHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCCEE
IELEAVSDEESMPIIEKNSLRESVAQDKLVSSAIAWIQAEK
EEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]