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The map label for this gene is yibP [H]

Identifier: 167621983

GI number: 167621983

Start: 50464

End: 51597

Strand: Reverse

Name: yibP [H]

Synonym: Shal_0042

Alternate gene names: 167621983

Gene position: 51597-50464 (Counterclockwise)

Preceding gene: 167621984

Following gene: 167621982

Centisome position: 0.99

GC content: 43.03

Gene sequence:

>1134_bases
GTGAACATTCGATTTTTTATAAAAGCCAGCATTATTGCTGGCTTTCTATCACTTCCTTTAACGGTTAACGCAACGGATCT
AGAGCGTCGTCAGTCTGAGCTAAAATCGATTCAAGTGCAGATAAACAAGCAACAGTCTGCGGTTAAAAATACCAGTAAAC
AAAGGGAGCGATTGGTCTCTTTATTGAAAGATGATGAAAAAGCGATTGCTCAAGCAGCAAGAAAAGTAAACACCACCAAG
CAAGCTCTAGCTAAAACTGATAAGAAAATTGCTGAACTAGACAGAAAACATGTTCAATTAGATAAACTAAAAAAAGCACA
ACAAAAATCACTGTCAAATCAACTCGCGAGTGCCTATTTAGCAGGAAATCACGATTACACAAAAATGCTGTTAAATCAGC
AGTCCCCAGCAAGTATTGAGCGCCTTCTGGCTTATTATCAATATTTGAATAATGCTCGTATCGACTCAATAAACCAATTA
CAGACAACCTTAAAAGAGTTAGACCAAATTCAAGCGGATCAGCAAGAACAACAAAATCGTCTGAATCAGCTGGTGCTTGA
ACAGCAGCAGCAAGCTAAAAAGCTCAATCAAGAACAGTCGCAAAGACAGAATACTCTGACACAACTGCAAAGAACCTTAA
ACAATAGCGGTGCAAAACTAGAGCAACTACAAATTGAAGAAGCCAGCCTTAAGAGGGTGGTCGAGCAAGCCTTACTTGCA
ATGAAGAACAACCCGTCATACGAAGGACTATCTAGCCGTAACAAGCTAAAGTGGCCCACCAAGGGGCATATAAAATCAGC
CTTTGGTAGTAGACGCTCCGGCCAGGTGAAGTGGAAAGGCGTCATCATTTCAGCCGATGAAGGCCAAAATGTGAGCGCAA
TTGCTGGCGGTAAGGTGATTTATGCCGATTGGCTACGCGGCTTTGGTATGGTTTTAGTGGTCGATCACGGTAAAGGCTAC
ATGAGTTTATACGGTCATGCACAAGCATTACTAAAGAGCGCGGGTGACTCTGTTAGCAAAGGAGAACCGGTTGCTTTAGT
CGGGCGTTCGGGTGGACAGACAGAGCCTGGCCTATACTTTGAAGTAAGGCACAAGGGGCAAGCTGTCGATCCTGCAAGGT
ATTGCAAACGTTAG

Upstream 100 bases:

>100_bases
TTTCAATATAGAATCACTATTAGCTACAAGCCACTTGCTTGTCTAAAGTGATTTTAATTCCCGCTGAATGAGCAACTATT
TAATGGAATTGGTATAACAC

Downstream 100 bases:

>100_bases
ACCATATAACCCCTTAATATATGAGGGGTTAATATGTCACAGTGCATTCGTTACTTTTGCTGTCTTGCAGTGGGGTTAGC
ATTAGGGTTATCGGTTACCC

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 377; Mature: 377

Protein sequence:

>377_residues
MNIRFFIKASIIAGFLSLPLTVNATDLERRQSELKSIQVQINKQQSAVKNTSKQRERLVSLLKDDEKAIAQAARKVNTTK
QALAKTDKKIAELDRKHVQLDKLKKAQQKSLSNQLASAYLAGNHDYTKMLLNQQSPASIERLLAYYQYLNNARIDSINQL
QTTLKELDQIQADQQEQQNRLNQLVLEQQQQAKKLNQEQSQRQNTLTQLQRTLNNSGAKLEQLQIEEASLKRVVEQALLA
MKNNPSYEGLSSRNKLKWPTKGHIKSAFGSRRSGQVKWKGVIISADEGQNVSAIAGGKVIYADWLRGFGMVLVVDHGKGY
MSLYGHAQALLKSAGDSVSKGEPVALVGRSGGQTEPGLYFEVRHKGQAVDPARYCKR

Sequences:

>Translated_377_residues
MNIRFFIKASIIAGFLSLPLTVNATDLERRQSELKSIQVQINKQQSAVKNTSKQRERLVSLLKDDEKAIAQAARKVNTTK
QALAKTDKKIAELDRKHVQLDKLKKAQQKSLSNQLASAYLAGNHDYTKMLLNQQSPASIERLLAYYQYLNNARIDSINQL
QTTLKELDQIQADQQEQQNRLNQLVLEQQQQAKKLNQEQSQRQNTLTQLQRTLNNSGAKLEQLQIEEASLKRVVEQALLA
MKNNPSYEGLSSRNKLKWPTKGHIKSAFGSRRSGQVKWKGVIISADEGQNVSAIAGGKVIYADWLRGFGMVLVVDHGKGY
MSLYGHAQALLKSAGDSVSKGEPVALVGRSGGQTEPGLYFEVRHKGQAVDPARYCKR
>Mature_377_residues
MNIRFFIKASIIAGFLSLPLTVNATDLERRQSELKSIQVQINKQQSAVKNTSKQRERLVSLLKDDEKAIAQAARKVNTTK
QALAKTDKKIAELDRKHVQLDKLKKAQQKSLSNQLASAYLAGNHDYTKMLLNQQSPASIERLLAYYQYLNNARIDSINQL
QTTLKELDQIQADQQEQQNRLNQLVLEQQQQAKKLNQEQSQRQNTLTQLQRTLNNSGAKLEQLQIEEASLKRVVEQALLA
MKNNPSYEGLSSRNKLKWPTKGHIKSAFGSRRSGQVKWKGVIISADEGQNVSAIAGGKVIYADWLRGFGMVLVVDHGKGY
MSLYGHAQALLKSAGDSVSKGEPVALVGRSGGQTEPGLYFEVRHKGQAVDPARYCKR

Specific function: Unknown

COG id: COG4942

COG function: function code D; Membrane-bound metallopeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0756 [H]

Homologues:

Organism=Escherichia coli, GI87082297, Length=412, Percent_Identity=35.6796116504854, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=36.9747899159664, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87082174, Length=118, Percent_Identity=33.0508474576271, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081989, Length=123, Percent_Identity=31.7073170731707, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 42207; Mature: 42207

Theoretical pI: Translated: 10.54; Mature: 10.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRFFIKASIIAGFLSLPLTVNATDLERRQSELKSIQVQINKQQSAVKNTSKQRERLVS
CCEEEEEHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LLKDDEKAIAQAARKVNTTKQALAKTDKKIAELDRKHVQLDKLKKAQQKSLSNQLASAYL
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGNHDYTKMLLNQQSPASIERLLAYYQYLNNARIDSINQLQTTLKELDQIQADQQEQQNR
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNQLVLEQQQQAKKLNQEQSQRQNTLTQLQRTLNNSGAKLEQLQIEEASLKRVVEQALLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MKNNPSYEGLSSRNKLKWPTKGHIKSAFGSRRSGQVKWKGVIISADEGQNVSAIAGGKVI
HCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEECCCCEE
YADWLRGFGMVLVVDHGKGYMSLYGHAQALLKSAGDSVSKGEPVALVGRSGGQTEPGLYF
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEE
EVRHKGQAVDPARYCKR
EEECCCCCCCHHHHHCC
>Mature Secondary Structure
MNIRFFIKASIIAGFLSLPLTVNATDLERRQSELKSIQVQINKQQSAVKNTSKQRERLVS
CCEEEEEHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LLKDDEKAIAQAARKVNTTKQALAKTDKKIAELDRKHVQLDKLKKAQQKSLSNQLASAYL
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGNHDYTKMLLNQQSPASIERLLAYYQYLNNARIDSINQLQTTLKELDQIQADQQEQQNR
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LNQLVLEQQQQAKKLNQEQSQRQNTLTQLQRTLNNSGAKLEQLQIEEASLKRVVEQALLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
MKNNPSYEGLSSRNKLKWPTKGHIKSAFGSRRSGQVKWKGVIISADEGQNVSAIAGGKVI
HCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEECCCCCCEEEECCCCEE
YADWLRGFGMVLVVDHGKGYMSLYGHAQALLKSAGDSVSKGEPVALVGRSGGQTEPGLYF
HHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCEE
EVRHKGQAVDPARYCKR
EEECCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]