Click here to switch to the map view.

The map label for this gene is rhcV

Identifier: 16520050

GI number: 16520050

Start: 69644

End: 71737

Strand: Reverse

Name: rhcV

Synonym: NGR_a00530

Alternate gene names: 16520050

Gene position: 71737-69644 (Counterclockwise)

Preceding gene: 16520049

Following gene: 16520051

Centisome position: 13.38

GC content: 57.07

Gene sequence:

>2094_bases
ATGGCCAACGCCCTGCGTAGATTCACCGAGTATGCGCCGGCCAATCCGGACTTGATGGTCGCGTTGATGCTGCTTCTGGC
CGTCAGCATGATGGTCATGCCAATACCGGTCATGGCGGTCGATGCGCTGATAGGCTTCAACATGGGTTTGGCTGTACTGC
TGCTGATGGCGGCCCTGTATGTCAGCACGCCACTTGATTTTTCCTCTTTGCCCGGCGTCATTTTGCTTTCCACGGTATTC
CGTCTGGCGCTCACCGTCGCGACGACGCGACTAATTCTGGCCGAGGGCGAGGCAGGCAGCATCATCCACACGTTCGGCAG
TTTTGTGATCTCAGGCAATATTGTCGTGGGTTTCGTTATATTTCTGGTAGTGACCATGGTGCAGTTCATGGTTCTCGCGA
AAGGCGCCGAACGCGTGGCAGAAGTGGCGGCGCGCTTCACCCTCGATGCTTTGCCAGGCAAGCAAATGGCGATCGACGCA
GAGTTGCGGAACGGTCACATCGATGCCGACGAATCCCGCAGGCGGCGCGCCGCATTAGAAAAAGAAAGCAAACTTTATGG
GGCGATGGACGGCGCGATGAAGTTTGTGAAGGGTGATTCCATCGCCGGGCTAGTGGTTATCTGCATCAACATGCTGGGTG
GAATTTCCATCGGCCTGCTCTCGAAGGGCATGTCGTTCGCCCAGGTGCTGCATCACTACACTCTGCTGACGATAGGTGAT
GCGTTAATCTCGCAGATTCCCGCCCTGCTGCTCTCAATTACAGCGGCAACCATGGTTACTCGTGTAACTGGGGCTTCGAA
ACTCAACCTCGGTGAGGACATAGCCAATCAACTCACCGCCAGTACACGAGCATTGCGGTTGGCGGCCTGCGTCCTGGTGG
CCATGGGCTTCGTTCCTGGTTTCCCTCTGCCTGTCTTTTTTATGTTGGCCGCAGTCTTCGCGGCGGCAAGCTTCGTCAAA
GGTGACGTCCTAGATGCCGACAAAGTCGATGCTACAACTGTAACTCCGGCGGAGTCTCAAACGCCAAACGTGGCTGCGCA
GCCAAATCCCATTGGCGTCTTCCTCGCGCCGAGCCTTACGAATGCGATCGACCAGGTCGAATTGCGGCAGCACATTGCGC
GTATTTCCCAACTAGTCTCGGCCGATCTCGGCATTATCGTTCCTCCGATCCCAGTCGATGTCGACCAGCAGCTGCCCGAG
TCGCAATTCAGGATAGATGTCGAAGGCGTGCCAGTCGAACAGGATTTGATTAATCCGGCGCAGCTGTCCCTCGCAGACGA
TCTGAAGAAGATTGAGTCAAGCGGCATCCCTTTTCGGCATGATCCTGAAACCCACAGAATTTGGGTTGAACAAAGCCACG
AGCCGGCGCTCAAAGCCGCCGGTATCCGGCATCATAGTCCCAGCGAACTCCTTGCGATGCGTGTCCATGCGACGTTGACT
TGCCATGCGCCGCGCTTGGTGGGTATCCAAGAGACCCGCCAACTACTGGGCCGGATGGAGCAGGAATACTCTGATCTGGT
GAAGGAGGTGCTGCGTACCACGCCGATCCCCCGGATTGCAGATGTGCTGCGCCGCCTCTTGGGCGAAGGTATACCAATCC
GAAATACCCGGCTCGTCTTGGAGGCATTGGCCGAATGGAGCGAACGTGAGCAAAACGTCGCCCTGCTCACGGAACACGTT
CGTTCTGGAATGAAGCGGCAGATCTGTCACCGCTATGGCAGACACGGTGTCCTACCTGCCTTCGTCATGGAACGTGAGAC
TGAGGATGTGGTGCGCTGCGCGGTTCGGGAAACGGCTGCAGGCCCCTACCTCGCACTAGAGGATCGGCAAAGCGAGGCGC
TGCTGTCACAGATGCGGCAGGTCTTTTCGAGCACGGCACCGGGCCAGACGCGCCCGATCGTCTTAACTTCAATGGATGTC
CGACGCTTCGTCCGCGGTTTTCTTACCCGAAACGGTATCGAGCTTGCCGTACTGTCTTATCAGGACCTCGCCTCCGATTT
TAAAATTCAACCCGTCGGATCCATCAGGCTCCCGCCCAGTAATGGAACGTCAGGGGAACCTCGCAGTATCCGCCCTTCTG
CCACTACTGGATGA

Upstream 100 bases:

>100_bases
CCGCAGGGGTCGGCCTCACGGACGACGCGCCTGCGGTCTTAGAGCTACGTTGCACCTGTGTAGCAGCAGAGTGGTTCAGA
AACGATCGTGAAGGGACCTC

Downstream 100 bases:

>100_bases
TAGGTGAGAACCAAACATGAATTCACATGAGAATAGAGTCGCCGCGCCGTTGCTTTCATTTCGTTTGAGCTTAGTTCTCT
TCGCAGTACTCTCCGTTCTG

Product: inner membrane protein RhcV; component of type III secretion apparatus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 697; Mature: 696

Protein sequence:

>697_residues
MANALRRFTEYAPANPDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVF
RLALTVATTRLILAEGEAGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDA
ELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD
ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVK
GDVLDADKVDATTVTPAESQTPNVAAQPNPIGVFLAPSLTNAIDQVELRQHIARISQLVSADLGIIVPPIPVDVDQQLPE
SQFRIDVEGVPVEQDLINPAQLSLADDLKKIESSGIPFRHDPETHRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLT
CHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHV
RSGMKRQICHRYGRHGVLPAFVMERETEDVVRCAVRETAAGPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDV
RRFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSIRLPPSNGTSGEPRSIRPSATTG

Sequences:

>Translated_697_residues
MANALRRFTEYAPANPDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVF
RLALTVATTRLILAEGEAGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDA
ELRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD
ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVK
GDVLDADKVDATTVTPAESQTPNVAAQPNPIGVFLAPSLTNAIDQVELRQHIARISQLVSADLGIIVPPIPVDVDQQLPE
SQFRIDVEGVPVEQDLINPAQLSLADDLKKIESSGIPFRHDPETHRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLT
CHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHV
RSGMKRQICHRYGRHGVLPAFVMERETEDVVRCAVRETAAGPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDV
RRFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSIRLPPSNGTSGEPRSIRPSATTG
>Mature_696_residues
ANALRRFTEYAPANPDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAALYVSTPLDFSSLPGVILLSTVFR
LALTVATTRLILAEGEAGSIIHTFGSFVISGNIVVGFVIFLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAE
LRNGHIDADESRRRRAALEKESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGDA
LISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPGFPLPVFFMLAAVFAAASFVKG
DVLDADKVDATTVTPAESQTPNVAAQPNPIGVFLAPSLTNAIDQVELRQHIARISQLVSADLGIIVPPIPVDVDQQLPES
QFRIDVEGVPVEQDLINPAQLSLADDLKKIESSGIPFRHDPETHRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLTC
HAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVLEALAEWSEREQNVALLTEHVR
SGMKRQICHRYGRHGVLPAFVMERETEDVVRCAVRETAAGPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVR
RFVRGFLTRNGIELAVLSYQDLASDFKIQPVGSIRLPPSNGTSGEPRSIRPSATTG

Specific function: Could be involved in the secretion of an unknown factor

COG id: COG4789

COG function: function code U; Type III secretory pathway, component EscV

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family

Homologues:

Organism=Escherichia coli, GI1788187, Length=678, Percent_Identity=33.6283185840708, Blast_Score=327, Evalue=1e-90,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): Y4YR_RHISN (P55726)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444170.1
- GeneID:   962238
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00530
- HOGENOM:   HBG595253
- ProtClustDB:   CLSK506585
- InterPro:   IPR001712
- InterPro:   IPR006302
- PRINTS:   PR00949
- TIGRFAMs:   TIGR01399

Pfam domain/function: PF00771 FHIPEP

EC number: NA

Molecular weight: Translated: 75527; Mature: 75396

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS00994 FHIPEP

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb8862d8)-; HASH(0xaec0178)-; HASH(0xac9a264)-; HASH(0xae8a358)-; HASH(0xad43150)-; HASH(0xaebfecc)-; HASH(0xaeca218)-; HASH(0xaec0124)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANALRRFTEYAPANPDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAALY
CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
VSTPLDFSSLPGVILLSTVFRLALTVATTRLILAEGEAGSIIHTFGSFVISGNIVVGFVI
HCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHH
FLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHH
KESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHH
ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FPLPVFFMLAAVFAAASFVKGDVLDADKVDATTVTPAESQTPNVAAQPNPIGVFLAPSLT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCHHH
NAIDQVELRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPA
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHCCCCCCEEEEECCCCCHHHHCCHH
QLSLADDLKKIESSGIPFRHDPETHRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLT
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHEEE
CHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
EALAEWSEREQNVALLTEHVRSGMKRQICHRYGRHGVLPAFVMERETEDVVRCAVRETAA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHCC
GPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSY
CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEEEEH
QDLASDFKIQPVGSIRLPPSNGTSGEPRSIRPSATTG
HHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure 
ANALRRFTEYAPANPDLMVALMLLLAVSMMVMPIPVMAVDALIGFNMGLAVLLLMAALY
CHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHH
VSTPLDFSSLPGVILLSTVFRLALTVATTRLILAEGEAGSIIHTFGSFVISGNIVVGFVI
HCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHCCCHHHHHHH
FLVVTMVQFMVLAKGAERVAEVAARFTLDALPGKQMAIDAELRNGHIDADESRRRRAALE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCHHHHHHHHHH
KESKLYGAMDGAMKFVKGDSIAGLVVICINMLGGISIGLLSKGMSFAQVLHHYTLLTIGD
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHH
ALISQIPALLLSITAATMVTRVTGASKLNLGEDIANQLTASTRALRLAACVLVAMGFVPG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FPLPVFFMLAAVFAAASFVKGDVLDADKVDATTVTPAESQTPNVAAQPNPIGVFLAPSLT
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCEEEEECCHHH
NAIDQVELRQHIARISQLVSADLGIIVPPIPVDVDQQLPESQFRIDVEGVPVEQDLINPA
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHCCCCCCEEEEECCCCCHHHHCCHH
QLSLADDLKKIESSGIPFRHDPETHRIWVEQSHEPALKAAGIRHHSPSELLAMRVHATLT
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHCCCCCCCHHHHHHHHHHHEEE
CHAPRLVGIQETRQLLGRMEQEYSDLVKEVLRTTPIPRIADVLRRLLGEGIPIRNTRLVL
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHH
EALAEWSEREQNVALLTEHVRSGMKRQICHRYGRHGVLPAFVMERETEDVVRCAVRETAA
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHHHCC
GPYLALEDRQSEALLSQMRQVFSSTAPGQTRPIVLTSMDVRRFVRGFLTRNGIELAVLSY
CCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHCCCCEEEEEEH
QDLASDFKIQPVGSIRLPPSNGTSGEPRSIRPSATTG
HHHHCCCEECCCCCEECCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424