Click here to switch to the map view.

The map label for this gene is rhcR

Identifier: 16520044

GI number: 16520044

Start: 77954

End: 78622

Strand: Reverse

Name: rhcR

Synonym: NGR_a00610

Alternate gene names: 16520044

Gene position: 78622-77954 (Counterclockwise)

Preceding gene: 16520043

Following gene: 16520045

Centisome position: 14.66

GC content: 50.22

Gene sequence:

>669_bases
ATGACTGAAATGCAGCCGGCAATTCTGGCCCTTCTTGCGATAACCGCGGCACTCGGCTTGCTGGTGTTAGCGGTCGTCAC
AACCACGGCATTTGTAAAAGTATCTGTTGTTCTATTCCTCGTCCGCAACGCACTCGGGACCCAGACGATACCACCTAACA
TAGTGCTGTACGCAGCCGCACTTATCCTCACCATGTTCGTTAGCGCACCCGTTGCTGAGCAGACCTATGATCGGATAACA
GATCCGAGACTCCGTTATCAATCGCTCGACGACTGGGCTGAAGCCGCCAAAGCAGGAAGTCAGCCCTTGCTTGAACATCT
CAAGAAGTTCACAAACGAAGAGCAGCGGCGATTTTTCCTCTCCTCGACGGAAAAGGTCTGGCCTGAGGAAATGCGCGCTG
GAGTTACAGCAGATGATTTCGCCATTCTTGTACCATCTTTTCTGATATCAGAACTAAAGCGCGCGTTCGAAATCGGCTTC
CTCCTTTATCTACCCTTTATCGTCATTGATCTTATCGTCACGACGATATTGATGGCCATGGGGATGTCGATGGTATCCCC
GACGATTATAGCTGTCCCGTTCAAACTATTCTTGTTCGTCGCTATTGATGGCTGGTCAAGATTGATGCACGGACTTGTGC
TCAGTTATACGATGCCGGGAGCTTTATGA

Upstream 100 bases:

>100_bases
CTTGTAGACATAGTTGCCAATGGTCGGTGTATCGGACGTGGCGACATCGTGCGCATCGGAGATGATCTGGGCATCAGACT
CCGTGGAAGGTTGGCATGCA

Downstream 100 bases:

>100_bases
TGACCGGATCCAGTATTGTTAGTCTAATGAGCCAATCATTGGTGGTTTTCATGATCTGGATTCTGCCCCCGCTCATTGCA
TCGGTGATTGTTGGCCTAAC

Product: type III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRIT
DPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGF
LLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL

Sequences:

>Translated_222_residues
MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRIT
DPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGF
LLYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL
>Mature_221_residues
TEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAALILTMFVSAPVAEQTYDRITD
PRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFLSSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGFL
LYLPFIVIDLIVTTILMAMGMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL

Specific function: Could be involved in the secretion of an unknown factor

COG id: COG4790

COG function: function code U; Type III secretory pathway, component EscR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliP/mopC/spaP family

Homologues:

Organism=Escherichia coli, GI1788259, Length=190, Percent_Identity=41.0526315789474, Blast_Score=136, Evalue=1e-33,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): Y4YL_RHISN (P55720)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444164.1
- GeneID:   962523
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00610
- HOGENOM:   HBG414116
- ProtClustDB:   PRK12797
- InterPro:   IPR005838
- InterPro:   IPR005773
- PRINTS:   PR01302
- TIGRFAMs:   TIGR01102

Pfam domain/function: PF00813 FliP

EC number: NA

Molecular weight: Translated: 24542; Mature: 24410

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01060 FLIP_1; PS01061 FLIP_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xbbb74e0)-; HASH(0xb30dd4c)-; HASH(0xb86c7c8)-; HASH(0xb929ac4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFL
HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH
SSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAM
HHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure 
TEMQPAILALLAITAALGLLVLAVVTTTAFVKVSVVLFLVRNALGTQTIPPNIVLYAAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
LILTMFVSAPVAEQTYDRITDPRLRYQSLDDWAEAAKAGSQPLLEHLKKFTNEEQRRFFL
HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHH
SSTEKVWPEEMRAGVTADDFAILVPSFLISELKRAFEIGFLLYLPFIVIDLIVTTILMAM
HHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMSMVSPTIIAVPFKLFLFVAIDGWSRLMHGLVLSYTMPGAL
HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424