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The map label for this gene is rhcQ

Identifier: 16520043

GI number: 16520043

Start: 78615

End: 79691

Strand: Reverse

Name: rhcQ

Synonym: NGR_a00620

Alternate gene names: NA

Gene position: 79691-78615 (Counterclockwise)

Preceding gene: 16520042

Following gene: 16520044

Centisome position: 14.86

GC content: 58.22

Gene sequence:

>1077_bases
GTGCAGCTAAGATCCGCTTTGATGACTGGCGTGGCCAGACGCACCATATTCGAACCAGCGCTGACACTGTCCCCCGAGGT
CGTCGCGTGGATCAACGACATAGCGGCTTCACGCGGGCCGTTTCAGAGCCGTGTCGGCGACAAACCACTTTCGGTGTCGA
TGGAAGGACTTGTTTGGCAACACGAGTCTTCTGCCATTCCGATGTTTGACTGCGTTTGGGATTTGGGAGGTGAAACGGTC
GTCTTGTCGCTCTCTCGGCCGCTTGTAGAGGCGCTCGTCTCGACAGTGCAGAGCGGGCTTGCTTTTCCTACCGAGCCAAC
TGCATCGCTCATTCTCGAACTTGCGCTCGAGCCGCTCATCGCTCGACTGGAGGATAAGACGAACCGGACCTTGCATCTCC
TTCGCGTGGGTAAAGCCATAACATTGGCTCCTTATGTGGAACTGGAGATCGTCATCGGCCCGGTCAGTGGCAAGGGTCGC
CTGTTCCTCTTCTCGCCTCTTGATGGCTTGGTGCCGTTTGCGTTCCGCGCGCTGGCCGAACTGCTTGCCCAGTTGCCGCG
GCAACCGCGCGAGCTTTCCCCAGAGCTTCCGGTGATAATTGCAGGTGAGATCGGCACGCTTCGAGCTTCGGCGGCGCTCC
TTCGAAAAGCATCCGTCGGTGATGCTCTGTTGCCAGACATATCGCCGTTCGGCCGTGGCCAAATCGCTCTGTCTGTGGGT
CAGTTATGGACCAGGGCAGACCTTGAGGGCGACCACCTAGTCCTGCGGGGACCCTTCCGCCCGCAATCACGCCCCTTGGA
GTGTGCGCATATGACAGAAATCGAATCGCAACTAAGGCCGTCGGATGCCGATCTCGATGACATCGAGATCGTGCTTGTCT
TTGAATGCGGCCGCTGGCCCATCTCGTTGGGCGAATTGAGGAGTGCCGGCGATGGGCATGTTTTTGAACTTGGGCGGCCA
ATCGATGGCCTTGTAGACATAGTTGCCAATGGTCGGTGTATCGGACGTGGCGACATCGTGCGCATCGGAGATGATCTGGG
CATCAGACTCCGTGGAAGGTTGGCATGCAATGACTGA

Upstream 100 bases:

>100_bases
AGAGGCCGACGACGAGATATTGCTGCGGTATGGGAGGGGTTCGCTCGACCAGAGGTCACGCAACGAGTTCCGGTAACTGC
AAGTTTCTGATTGACCGCAC

Downstream 100 bases:

>100_bases
AATGCAGCCGGCAATTCTGGCCCTTCTTGCGATAACCGCGGCACTCGGCTTGCTGGTGTTAGCGGTCGTCACAACCACGG
CATTTGTAAAAGTATCTGTT

Product: type III secretion apparatus subunit RhcQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQLRSALMTGVARRTIFEPALTLSPEVVAWINDIAASRGPFQSRVGDKPLSVSMEGLVWQHESSAIPMFDCVWDLGGETV
VLSLSRPLVEALVSTVQSGLAFPTEPTASLILELALEPLIARLEDKTNRTLHLLRVGKAITLAPYVELEIVIGPVSGKGR
LFLFSPLDGLVPFAFRALAELLAQLPRQPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVG
QLWTRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRP
IDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND

Sequences:

>Translated_358_residues
MQLRSALMTGVARRTIFEPALTLSPEVVAWINDIAASRGPFQSRVGDKPLSVSMEGLVWQHESSAIPMFDCVWDLGGETV
VLSLSRPLVEALVSTVQSGLAFPTEPTASLILELALEPLIARLEDKTNRTLHLLRVGKAITLAPYVELEIVIGPVSGKGR
LFLFSPLDGLVPFAFRALAELLAQLPRQPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVG
QLWTRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRP
IDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND
>Mature_358_residues
MQLRSALMTGVARRTIFEPALTLSPEVVAWINDIAASRGPFQSRVGDKPLSVSMEGLVWQHESSAIPMFDCVWDLGGETV
VLSLSRPLVEALVSTVQSGLAFPTEPTASLILELALEPLIARLEDKTNRTLHLLRVGKAITLAPYVELEIVIGPVSGKGR
LFLFSPLDGLVPFAFRALAELLAQLPRQPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVG
QLWTRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLDDIEIVLVFECGRWPISLGELRSAGDGHVFELGRP
IDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND

Specific function: Could be involved in the secretion of an unknown factor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4YK_RHISN (P55719)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444163.1
- ProteinModelPortal:   P55719
- SMR:   P55719
- GeneID:   962540
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00620
- HOGENOM:   HBG540149
- ProtClustDB:   CLSK506580
- GO:   GO:0006935
- InterPro:   IPR001172
- InterPro:   IPR001543
- InterPro:   IPR013385
- PRINTS:   PR00956
- TIGRFAMs:   TIGR02551

Pfam domain/function: PF01052 SpoA; SSF101801 SpoA

EC number: NA

Molecular weight: Translated: 38767; Mature: 38767

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLRSALMTGVARRTIFEPALTLSPEVVAWINDIAASRGPFQSRVGDKPLSVSMEGLVWQ
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEECCEEEE
HESSAIPMFDCVWDLGGETVVLSLSRPLVEALVSTVQSGLAFPTEPTASLILELALEPLI
CCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ARLEDKTNRTLHLLRVGKAITLAPYVELEIVIGPVSGKGRLFLFSPLDGLVPFAFRALAE
HHHHCCCCCEEEEEEECCEEEEECEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHH
LLAQLPRQPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVG
HHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHH
QLWTRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLDDIEIVLVFECGRWP
HHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
ISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND
CCHHHHCCCCCCCEEECCCCHHHHHHHHHCCEEECCCCEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MQLRSALMTGVARRTIFEPALTLSPEVVAWINDIAASRGPFQSRVGDKPLSVSMEGLVWQ
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCEEEECCEEEE
HESSAIPMFDCVWDLGGETVVLSLSRPLVEALVSTVQSGLAFPTEPTASLILELALEPLI
CCCCCCCHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ARLEDKTNRTLHLLRVGKAITLAPYVELEIVIGPVSGKGRLFLFSPLDGLVPFAFRALAE
HHHHCCCCCEEEEEEECCEEEEECEEEEEEEEECCCCCCCEEEECCCHHHHHHHHHHHHH
LLAQLPRQPRELSPELPVIIAGEIGTLRASAALLRKASVGDALLPDISPFGRGQIALSVG
HHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEHH
QLWTRADLEGDHLVLRGPFRPQSRPLECAHMTEIESQLRPSDADLDDIEIVLVFECGRWP
HHHHCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
ISLGELRSAGDGHVFELGRPIDGLVDIVANGRCIGRGDIVRIGDDLGIRLRGRLACND
CCHHHHCCCCCCCEEECCCCHHHHHHHHHCCEEECCCCEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424