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The map label for this gene is rhcL

Identifier: 16520040

GI number: 16520040

Start: 81580

End: 82206

Strand: Reverse

Name: rhcL

Synonym: NGR_a00650

Alternate gene names: 16520040

Gene position: 82206-81580 (Counterclockwise)

Preceding gene: 16520039

Following gene: 16520041

Centisome position: 15.33

GC content: 58.85

Gene sequence:

>627_bases
ATGACAGCCGACATTTCAGCGGCACCCGTCGCGCCGCAGATGCGCCCATTGGGGCCACTGATACCCGCGAGTGAGCTTAA
TATCTGGCACAGCGCTGGAGATGCGCTTGCCGCAGCAAAACGGCATCAGCAGCGGGTCCGTACCTGGGCACGCGCCGCTT
ATCAGAGGGAGCGGGCGCGCGGCTACGCCGAGGGGTTGAATACAGGCGCCGAGGAAATGTCAGGGCTGATTGCACGAGCA
GTCACCGAAGTAGCGCAACGAAAGGCAGTTCTGGAAAAGGAATTGCCACAGCTTGTCATAGAGATACTGAGCGATCTTTT
AGGTGCTTTCGATCCGGGTGAGCTGTTGGTGAGGGCTGTTCGTCACGCGATTGAGCGCAGATACAACGGCGCGGAAGAAG
TTTGCCTTCATGTGTGTCCCACGCAAGTCGATATGCTCGCGCGCGAGTTCGCCGGTTGCGACGGACGGGAGAAGCGGCCG
AAGGTTCGAATTGAACCGGATCCTACGTTGTCGCCGCAAGAGTGTGTGCTGTGGAGCGAGTATGGCAACGTCGCTCTTGG
ACTTGATGCGCAGATGCGCGCGCTGCGCCTTGGCTTCGAGTACCTTTCTGAAGAAGGAGAACTGTGA

Upstream 100 bases:

>100_bases
CTCGGTACAGCCGCGGAGAACCCGGCGCCTGAGCACGATGGTGCCTCAAGCGGGTTGTTTTCGCTCGTGATAGCCCATTT
CGAGATGGAGAGCCCGTAAT

Downstream 100 bases:

>100_bases
TCACTCCGGTACCACAGCATAATAGCCTTGAGGGGACTCCTCTCGAGCCAGCGATCTCGTCTTTGTGGTCCACGGCAAAG
AGAATCGATACGCGCGTCGT

Product: nodulation protein RhcL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 207

Protein sequence:

>208_residues
MTADISAAPVAPQMRPLGPLIPASELNIWHSAGDALAAAKRHQQRVRTWARAAYQRERARGYAEGLNTGAEEMSGLIARA
VTEVAQRKAVLEKELPQLVIEILSDLLGAFDPGELLVRAVRHAIERRYNGAEEVCLHVCPTQVDMLAREFAGCDGREKRP
KVRIEPDPTLSPQECVLWSEYGNVALGLDAQMRALRLGFEYLSEEGEL

Sequences:

>Translated_208_residues
MTADISAAPVAPQMRPLGPLIPASELNIWHSAGDALAAAKRHQQRVRTWARAAYQRERARGYAEGLNTGAEEMSGLIARA
VTEVAQRKAVLEKELPQLVIEILSDLLGAFDPGELLVRAVRHAIERRYNGAEEVCLHVCPTQVDMLAREFAGCDGREKRP
KVRIEPDPTLSPQECVLWSEYGNVALGLDAQMRALRLGFEYLSEEGEL
>Mature_207_residues
TADISAAPVAPQMRPLGPLIPASELNIWHSAGDALAAAKRHQQRVRTWARAAYQRERARGYAEGLNTGAEEMSGLIARAV
TEVAQRKAVLEKELPQLVIEILSDLLGAFDPGELLVRAVRHAIERRYNGAEEVCLHVCPTQVDMLAREFAGCDGREKRPK
VRIEPDPTLSPQECVLWSEYGNVALGLDAQMRALRLGFEYLSEEGEL

Specific function: Unknown

COG id: COG1317

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NOLV_RHISN (P55716)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444160.1
- GeneID:   962520
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00650
- HOGENOM:   HBG655990
- ProtClustDB:   CLSK506577
- GO:   GO:0009877
- InterPro:   IPR010586
- InterPro:   IPR012842
- TIGRFAMs:   TIGR02499

Pfam domain/function: PF06635 NolV

EC number: NA

Molecular weight: Translated: 22982; Mature: 22850

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTADISAAPVAPQMRPLGPLIPASELNIWHSAGDALAAAKRHQQRVRTWARAAYQRERAR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYAEGLNTGAEEMSGLIARAVTEVAQRKAVLEKELPQLVIEILSDLLGAFDPGELLVRAV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RHAIERRYNGAEEVCLHVCPTQVDMLAREFAGCDGREKRPKVRIEPDPTLSPQECVLWSE
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHEEECC
YGNVALGLDAQMRALRLGFEYLSEEGEL
CCCEEECCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TADISAAPVAPQMRPLGPLIPASELNIWHSAGDALAAAKRHQQRVRTWARAAYQRERAR
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYAEGLNTGAEEMSGLIARAVTEVAQRKAVLEKELPQLVIEILSDLLGAFDPGELLVRAV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RHAIERRYNGAEEVCLHVCPTQVDMLAREFAGCDGREKRPKVRIEPDPTLSPQECVLWSE
HHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHEEECC
YGNVALGLDAQMRALRLGFEYLSEEGEL
CCCEEECCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424