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The map label for this gene is rhcN

Identifier: 16520041

GI number: 16520041

Start: 80228

End: 81583

Strand: Reverse

Name: rhcN

Synonym: NGR_a00640

Alternate gene names: 16520041

Gene position: 81583-80228 (Counterclockwise)

Preceding gene: 16520040

Following gene: 16520042

Centisome position: 15.22

GC content: 60.84

Gene sequence:

>1356_bases
GTGATCACTCCGGTACCACAGCATAATAGCCTTGAGGGGACTCCTCTCGAGCCAGCGATCTCGTCTTTGTGGTCCACGGC
AAAGAGAATCGATACGCGCGTCGTGCGAGGACGGATCACGAGGGCTGTTGGTACCCTGATCCATGCCGTCTTGCCAGAGG
CTCGGATTGGGGAACTTTGTCTGCTGCAGGATACGCGAACCGGACTGTCGCTCGAAGCAGAGGTAATCGGCTTGTTGGAC
AATGGCGTGCTGCTCACGCCGATCGGAGGCTTGGCGGGTCTGTCCAGCCGCGCGGAAGTCGTCTCCACTGGACGAATGCG
TGAAGTGCCGATCGGCCCCGATTTGCTTGGCCGTGTGATCGACAGCCGCTGCCGTCCACTCGACGGCAAAGGCGAAGTTA
AAACCACCGAAGTTCGTCCGCTGCACGGCAGGGCGCCCAATCCAATGACGAGGCGCATGGTTGAGCGGCCATTCCCGCTT
GGGGTGCGCGCGCTCGATGGTCTCCTCACATGCGGTGAGGGGCAGCGGATCGGGATTTATGGCGAGCCTGGCGGGGGCAA
GTCGACGCTAATATCACAAATCGTAAAAGGTGCCGCCGCCGATGTCGTCATAGTCGCGCTGATAGGCGAGCGTGGCCGCG
AAGTACGTGAATTCGTAGAGCGGCATCTTGGGGAGGAAGGCCTCCGCCGTGCGATAGTTGTGGTCGAGACCTCCGATCGC
TCGGCAACTGAGCGGGCGCAATGTGCTCCCATGGCGACCGCCCTGGCGGAGTACTTTCGCGAACAAGGGCTGCGTGTCGC
TCTCCTGTTGGACTCGCTGACGCGCTTCTGCCGTGCGATGCGCGAGATAGGTCTTGCTGCGGGAGAGCCGCCGACCCGGC
GGGGCTTCCCTCCTTCTGTTTTTGCCGCCCTGCCAGGCCTGCTGGAGCGCGCCGGCCTGGGTGAGCGCGGTTCAATCACA
GCCTTCTATACTGTGCTTGTCGAAGGTGATGGCACAGGCGATCCGATCGCCGAGGAATCGCGCGGCATTCTCGACGGACA
TATCGTCCTCTCACGCGCTCTTGCGGCGCGATCCCATTTCCCAGCTATCGACGTGCTGCAGAGTCGCAGCCGAGTTATGG
ATGCGGTCGTTTCTGAGACGCATCGCAAGGCAGCATCCTTCTTTCGTGATCTCCTCGCGCGCTATGCAGAGTGCGAGTTT
CTGATCAACGTCGGCGAATACAAGCAAGGCGGCGACCCCCTAACTGACCGCGCCGTCGCGTCAATTGGTGAGTTGAAAGA
GTTTTTGCGCCAGAGCGAAGACGAGGTATCAGATTTTGAGGAGACGGTCGGATGGATGTCGCGTTTGACCTCGTGA

Upstream 100 bases:

>100_bases
GTGTGCTGTGGAGCGAGTATGGCAACGTCGCTCTTGGACTTGATGCGCAGATGCGCGCGCTGCGCCTTGGCTTCGAGTAC
CTTTCTGAAGAAGGAGAACT

Downstream 100 bases:

>100_bases
ATTATGCTTACGCTTCAAGGCTACGGCTTTTAAAGGAAATGCAAGAGCGCGACGCCCGTAGGAAGCTGTCGAAGAAGGAA
GCTCAGCACCACATGGCCAT

Product: ATPase RhcN for type III secretion

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MITPVPQHNSLEGTPLEPAISSLWSTAKRIDTRVVRGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLD
NGVLLTPIGGLAGLSSRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPL
GVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR
SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGLGERGSIT
AFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEF
LINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSDFEETVGWMSRLTS

Sequences:

>Translated_451_residues
MITPVPQHNSLEGTPLEPAISSLWSTAKRIDTRVVRGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLD
NGVLLTPIGGLAGLSSRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPL
GVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR
SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGLGERGSIT
AFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEF
LINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSDFEETVGWMSRLTS
>Mature_451_residues
MITPVPQHNSLEGTPLEPAISSLWSTAKRIDTRVVRGRITRAVGTLIHAVLPEARIGELCLLQDTRTGLSLEAEVIGLLD
NGVLLTPIGGLAGLSSRAEVVSTGRMREVPIGPDLLGRVIDSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPL
GVRALDGLLTCGEGQRIGIYGEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR
SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSVFAALPGLLERAGLGERGSIT
AFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHFPAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEF
LINVGEYKQGGDPLTDRAVASIGELKEFLRQSEDEVSDFEETVGWMSRLTS

Specific function: Could be involved in the secretion of an unknown factor. Probable catalytic subunit of the translocase

COG id: COG1157

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway ATPase

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family

Homologues:

Organism=Homo sapiens, GI32189394, Length=428, Percent_Identity=28.5046728971963, Blast_Score=149, Evalue=7e-36,
Organism=Homo sapiens, GI50345984, Length=375, Percent_Identity=29.0666666666667, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI4757810, Length=375, Percent_Identity=29.0666666666667, Blast_Score=125, Evalue=8e-29,
Organism=Homo sapiens, GI19913424, Length=347, Percent_Identity=29.6829971181556, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI19913428, Length=401, Percent_Identity=27.1820448877805, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI19913426, Length=327, Percent_Identity=26.605504587156, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI1788251, Length=424, Percent_Identity=43.6320754716981, Blast_Score=315, Evalue=3e-87,
Organism=Escherichia coli, GI1790170, Length=406, Percent_Identity=27.0935960591133, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1790172, Length=405, Percent_Identity=30.6172839506173, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1790217, Length=297, Percent_Identity=29.2929292929293, Blast_Score=83, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI25144756, Length=367, Percent_Identity=28.0653950953678, Blast_Score=139, Evalue=4e-33,
Organism=Caenorhabditis elegans, GI17565854, Length=349, Percent_Identity=30.945558739255, Blast_Score=128, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI71988063, Length=359, Percent_Identity=29.8050139275766, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI71988080, Length=359, Percent_Identity=29.8050139275766, Blast_Score=126, Evalue=3e-29,
Organism=Caenorhabditis elegans, GI17570191, Length=341, Percent_Identity=25.8064516129032, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17510931, Length=311, Percent_Identity=27.9742765273312, Blast_Score=112, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI71988074, Length=420, Percent_Identity=26.9047619047619, Blast_Score=106, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6322581, Length=403, Percent_Identity=28.0397022332506, Blast_Score=145, Evalue=9e-36,
Organism=Saccharomyces cerevisiae, GI6319370, Length=361, Percent_Identity=29.6398891966759, Blast_Score=136, Evalue=7e-33,
Organism=Saccharomyces cerevisiae, GI6319603, Length=328, Percent_Identity=28.6585365853659, Blast_Score=121, Evalue=2e-28,
Organism=Saccharomyces cerevisiae, GI6320016, Length=193, Percent_Identity=33.6787564766839, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24638766, Length=367, Percent_Identity=28.8828337874659, Blast_Score=142, Evalue=5e-34,
Organism=Drosophila melanogaster, GI28574560, Length=420, Percent_Identity=27.3809523809524, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24658560, Length=383, Percent_Identity=29.7650130548303, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24583992, Length=353, Percent_Identity=30.3116147308782, Blast_Score=122, Evalue=5e-28,
Organism=Drosophila melanogaster, GI24583988, Length=264, Percent_Identity=32.5757575757576, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24583986, Length=264, Percent_Identity=32.5757575757576, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24583984, Length=264, Percent_Identity=32.5757575757576, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI20129479, Length=251, Percent_Identity=30.2788844621514, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI281361666, Length=328, Percent_Identity=25.9146341463415, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24646341, Length=328, Percent_Identity=25.9146341463415, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136796, Length=328, Percent_Identity=25.9146341463415, Blast_Score=111, Evalue=1e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): Y4YI_RHISN (P55717)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444161.1
- ProteinModelPortal:   P55717
- SMR:   P55717
- GeneID:   962522
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a00640
- HOGENOM:   HBG565875
- ProtClustDB:   CLSK506578
- GO:   GO:0005737
- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR004100
- InterPro:   IPR005714
- InterPro:   IPR013380
- SMART:   SM00382
- TIGRFAMs:   TIGR01026
- TIGRFAMs:   TIGR02546

Pfam domain/function: PF00006 ATP-synt_ab; PF02874 ATP-synt_ab_N

EC number: =3.6.3.14

Molecular weight: Translated: 48767; Mature: 48767

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPVPQHNSLEGTPLEPAISSLWSTAKRIDTRVVRGRITRAVGTLIHAVLPEARIGELC
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LLQDTRTGLSLEAEVIGLLDNGVLLTPIGGLAGLSSRAEVVSTGRMREVPIGPDLLGRVI
EEECCCCCCEEHHHEEEEECCCEEEECCCHHHCCCCHHHHHHCCCEEECCCCHHHHHHHH
DSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPLGVRALDGLLTCGEGQRIGIY
HHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
GEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR
ECCCCCHHHHHHHHHHCCHHHHHHEEHHHHCCHHHHHHHHHHHCHHHHCEEEEEEECCCC
SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSV
CHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
FAALPGLLERAGLGERGSITAFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHF
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCC
PAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEFLINVGEYKQGGDPLTDRAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHH
SIGELKEFLRQSEDEVSDFEETVGWMSRLTS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MITPVPQHNSLEGTPLEPAISSLWSTAKRIDTRVVRGRITRAVGTLIHAVLPEARIGELC
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LLQDTRTGLSLEAEVIGLLDNGVLLTPIGGLAGLSSRAEVVSTGRMREVPIGPDLLGRVI
EEECCCCCCEEHHHEEEEECCCEEEECCCHHHCCCCHHHHHHCCCEEECCCCHHHHHHHH
DSRCRPLDGKGEVKTTEVRPLHGRAPNPMTRRMVERPFPLGVRALDGLLTCGEGQRIGIY
HHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
GEPGGGKSTLISQIVKGAAADVVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDR
ECCCCCHHHHHHHHHHCCHHHHHHEEHHHHCCHHHHHHHHHHHCHHHHCEEEEEEECCCC
SATERAQCAPMATALAEYFREQGLRVALLLDSLTRFCRAMREIGLAAGEPPTRRGFPPSV
CHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
FAALPGLLERAGLGERGSITAFYTVLVEGDGTGDPIAEESRGILDGHIVLSRALAARSHF
HHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCC
PAIDVLQSRSRVMDAVVSETHRKAASFFRDLLARYAECEFLINVGEYKQGGDPLTDRAVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHH
SIGELKEFLRQSEDEVSDFEETVGWMSRLTS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424