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The map label for this gene is nodD2

Identifier: 16520024

GI number: 16520024

Start: 100504

End: 101442

Strand: Direct

Name: nodD2

Synonym: NGR_a00810

Alternate gene names: 16520024

Gene position: 100504-101442 (Clockwise)

Preceding gene: 16520028

Following gene: 16520014

Centisome position: 18.74

GC content: 55.48

Gene sequence:

>939_bases
ATGCGTTTTAAGGGACTTGATCTTAATCTGCTCGTAGCGCTCGATGCTCTGATGACAAAGCGAAGCGTTACCGCAGCTGC
TCGCAGTATCAACCTCAGTCAGCCGGCCATGAGCGCCGCCATCGCCCGCCTACGCACCTATTTCGGCGACGACTTGTTCA
CGATGCGAGGTCGCGAACTTATCCCAACTCCGCGTGCGATAGCGCTCGCCCCCGCAGTCCGCGATGCTCTGCTGCACATC
CAGTTCTCCATCATTTCTTGGGATATGTTTAACCCAGTTCAGTCGGAGCGACGCTTCAGGATCAGGCTTTCCGACGTCAT
GATGCTGGTGTTTTTTGAAAGAGTCGTGAAGCGGCTGGCGCGAGAGGCGCCTGGCATCGGCTTCGAGTTGCTGCCTCTCA
CTGAGGATCCCGATGAACTTCTCCGGTACGGTGACGTCGATTTCGTGATCCTTCCGGAATTGTTCGCGTCGAGCGATCAT
CCAAAGGCGAAACTGCTCGACGACACGCTGGTTTGCGTAGGTTGCCCCACTAACAAGCAGTTAAAACGGCAGCTTTCTTT
CGAAAACTACGGATCGATGGGTCATATTGCGGCTAAGTTCGGACGTACGCTAAAGCCCTCCATCGAGAATTGGTTGTTGC
TTGAGCACGGTCTCAAGAGGCGTATCGAAGTCGTCGTGCCGGGATTTAGTCTAATCCCGCCTTTGCTGTCGGGAACCGAT
CGCATAGCGACCATGCCGTTGCGGCTGGTGGAACATTTCGCAAAAACAACGCCGCTGCGGGTCGCCGAACTTCCACTGGC
ACTTCCACCATTCGCCCAAGCTGTCCAGTGGCCTAGCCTACACAACAGGGATCAGGCGAGCATCTGGATGCGGCAGGTAC
TACTACAGGAAGCGTTGCACATGACAGCTCCGCGTGATTCAGTGGAATATCGACCCTAG

Upstream 100 bases:

>100_bases
TTCTTCTGAGCAGCGGGAACAAGGCAACGGCGCTCACTCTGTAACATCACTGAAAACTACCTGTTCTATGAGGGCAGAAA
CGCTTTGGTTGAATTATATA

Downstream 100 bases:

>100_bases
TCGTTCGCAGCCGCGGATTTGACCGGCTTTGAGACACCCTGCTCACGATCAATGTGCCGCTCCGCCATGATCATGAAGCA
AGACCCTGGTACACGGCTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIPTPRAIALAPAVRDALLHI
QFSIISWDMFNPVQSERRFRIRLSDVMMLVFFERVVKRLAREAPGIGFELLPLTEDPDELLRYGDVDFVILPELFASSDH
PKAKLLDDTLVCVGCPTNKQLKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTD
RIATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQVLLQEALHMTAPRDSVEYRP

Sequences:

>Translated_312_residues
MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIPTPRAIALAPAVRDALLHI
QFSIISWDMFNPVQSERRFRIRLSDVMMLVFFERVVKRLAREAPGIGFELLPLTEDPDELLRYGDVDFVILPELFASSDH
PKAKLLDDTLVCVGCPTNKQLKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTD
RIATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQVLLQEALHMTAPRDSVEYRP
>Mature_312_residues
MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIPTPRAIALAPAVRDALLHI
QFSIISWDMFNPVQSERRFRIRLSDVMMLVFFERVVKRLAREAPGIGFELLPLTEDPDELLRYGDVDFVILPELFASSDH
PKAKLLDDTLVCVGCPTNKQLKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTD
RIATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQVLLQEALHMTAPRDSVEYRP

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=297, Percent_Identity=28.956228956229, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI87081766, Length=271, Percent_Identity=21.4022140221402, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35284; Mature: 35284

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCCCC
IPTPRAIALAPAVRDALLHIQFSIISWDMFNPVQSERRFRIRLSDVMMLVFFERVVKRLA
CCCCCHHHHHHHHHHHHHHEEEEEEEEHHCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHH
REAPGIGFELLPLTEDPDELLRYGDVDFVILPELFASSDHPKAKLLDDTLVCVGCPTNKQ
HHCCCCCEEEEECCCCHHHHHHHCCCCEEECCHHHCCCCCCCHHCCCCEEEEEECCCCHH
LKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTD
HHHHHCHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHHHCCCC
RIATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQVLLQEALH
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MTAPRDSVEYRP
HCCCCCCCCCCC
>Mature Secondary Structure
MRFKGLDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGREL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEECCCCCC
IPTPRAIALAPAVRDALLHIQFSIISWDMFNPVQSERRFRIRLSDVMMLVFFERVVKRLA
CCCCCHHHHHHHHHHHHHHEEEEEEEEHHCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHH
REAPGIGFELLPLTEDPDELLRYGDVDFVILPELFASSDHPKAKLLDDTLVCVGCPTNKQ
HHCCCCCEEEEECCCCHHHHHHHCCCCEEECCHHHCCCCCCCHHCCCCEEEEEECCCCHH
LKRQLSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTD
HHHHHCHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCEEEEEECCHHHHHHHHCCCC
RIATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQVLLQEALH
HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
MTAPRDSVEYRP
HCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2826389 [H]