Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16520014
GI number: 16520014
Start: 110943
End: 111263
Strand: Direct
Name: Not Available
Synonym: NGR_a00910
Alternate gene names: NA
Gene position: 110943-111263 (Clockwise)
Preceding gene: 16520024
Following gene: 16520013
Centisome position: 20.69
GC content: 60.75
Gene sequence:
>321_bases GTGGCAGTCCCGTCGTGCCAGACCGATGGTGTTCGCGCACTCAAATTCGTGGATCACGTCGGCGGCGAAGAGCTTGGCGA TAATGTCAGAGGCGTCGTCCTAATCGCCTGCACTACCATCAGTATGTCGCCGTGGCCGGTTACCGGGATGGCGGGGCTGG TCGGGTCGAGAACAGTAAGCACCTCGGGCGTCAGGATCTGCGGTTTAACGGCAACTGGCACGGTCATTGCTCATCAGCTT CACATGACAGTCGCCGCTGTCGGTTTTCGGAGAATCGGCTTGGCAGGCGACCGGGCGCGCCCCATATGGAGGATCTCCTG A
Upstream 100 bases:
>100_bases AAGATGTCTCGGCGGTCATTTGATGGAGGCAAATAACATTTCTTGCCGGCCAAGGTTTGCCTTGAGACAAAGGTGAGAAT TATGGACAGAAGGCGGTGAG
Downstream 100 bases:
>100_bases TGACCATTGAGCATTCCGCGGAGACCCGCGCCAAGCCACCCTTATATCGCCATCTCTATGCCCAGGTTCTGGCAGCGATC GCGGGCATCCTGTTTGGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 106; Mature: 105
Protein sequence:
>106_residues MAVPSCQTDGVRALKFVDHVGGEELGDNVRGVVLIACTTISMSPWPVTGMAGLVGSRTVSTSGVRICGLTATGTVIAHQL HMTVAAVGFRRIGLAGDRARPIWRIS
Sequences:
>Translated_106_residues MAVPSCQTDGVRALKFVDHVGGEELGDNVRGVVLIACTTISMSPWPVTGMAGLVGSRTVSTSGVRICGLTATGTVIAHQL HMTVAAVGFRRIGLAGDRARPIWRIS >Mature_105_residues AVPSCQTDGVRALKFVDHVGGEELGDNVRGVVLIACTTISMSPWPVTGMAGLVGSRTVSTSGVRICGLTATGTVIAHQLH MTVAAVGFRRIGLAGDRARPIWRIS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4WO_RHISN (P55693)
Other databases:
- EMBL: U00090 - RefSeq: NP_444134.1 - GeneID: 962246 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00910
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11044; Mature: 10913
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVPSCQTDGVRALKFVDHVGGEELGDNVRGVVLIACTTISMSPWPVTGMAGLVGSRTVS CCCCCCCCCCHHHHHHHHHCCCHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEC TSGVRICGLTATGTVIAHQLHMTVAAVGFRRIGLAGDRARPIWRIS CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC >Mature Secondary Structure AVPSCQTDGVRALKFVDHVGGEELGDNVRGVVLIACTTISMSPWPVTGMAGLVGSRTVS CCCCCCCCCHHHHHHHHHCCCHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEC TSGVRICGLTATGTVIAHQLHMTVAAVGFRRIGLAGDRARPIWRIS CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424