Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16520001
GI number: 16520001
Start: 128358
End: 129896
Strand: Reverse
Name: Not Available
Synonym: NGR_a01040
Alternate gene names: 16520001
Gene position: 129896-128358 (Counterclockwise)
Preceding gene: 16520000
Following gene: 16520002
Centisome position: 24.23
GC content: 59.52
Gene sequence:
>1539_bases ATGTCAGAACCGTTCTTTAGGCCGGGGTCGGGGCCCGCGCCCGGCCACCCTACTGCAGAACCTTGGAGAAGAAGGAAGAG GTGGTACTCGCCAAGCGATGGTCGAGCTGGCACTGCACGGTCGCATTTGCCACAGCGGTCGACGAGCCATGATGGAGTGT GTTCGCGTATCTGTGCATTTGTCCTATGTATGGTCGCACTGCAATTTCTGATGACCTCAGCAATGGCGGCCGACGAGAGC CCGCTTCGCGAAGCCGAGGTTGCAAATTTCATGCTGGGCAACGGCATGGAGGTAGTCGTCATACCCGATCACCGGGCGCC GATCGTCACGCAGATGATCTGGTATAAGGTCGGCAATGCCGACGAGCCACCCGGCAAATCCGGCATTGCTCATTTCCTGG AGCATCTGATGTTCAAGGGAACGAAGAAGCATCCGTCCGGAGAGTTTAGCGCAAAGATCGCGGAGATCGGCGGTGAGGAG AACGCCTTCACGGGTTCCGACTACACCGCCTACCATCAGACGGTCACGCCAGAGTCGCTCAGAACAATGATGGAATTCGA AGCTGACCGGATGCGCCATCTCGTTCTCACCGATGCGGTGATCGTACCCGAACGCGATGTCATTCTTGAAGAGCGACGCT GGCGCGTCGAGAACGATCCGGAGCAGCTACTTGAGGAGGAGATGCAGGCGACCTTGTATCAGAACCACCCTTACCGCATC CCGACGATTGGCTGGATGCATGAAATGGAACAGCTTAATCGCGAAGACGCACTAAAGTTCTATGACCGCTACTATGCCCC CAACAATGCCATTCTGGTCGTGGCAGGCGACGTGGACGCCGGCAGGGTGCGGCAGCTAGCGGACGAGACTTTCGGGACCC TGCCTCGCGGTCCGGATCTGCCGGCGCGGGTGAGGCCGCAAGAGCCGGAGCAGAACACTAAACGGATCGTCGCGCTCACC GACCCGCGCGTCACGGTGCCGAGCTTCCAAAAATCCTGGGTAACGACGTCCTACGGAACAGCCGAGCAGGGCGAAGCGGA AGCCCTCGATATCCTGTCGGAGATTCTCGGCGGGGGAACGCGCAGCCGGATCTATCAGGAGCTGGTGGTCAAACAGGCAA TAGCCTCCTCTGGCGGGGCCTATTTCAACGGAAGGTCGCTCGATCCGTCGAGCTTCACGGTTTTTGGCTCGCCGCGCGGC GAGGCGAAGATTGAGGAGGTGGAGGATGCGATAGACGCTGAAATTCGGAAGATCATCGAGTTCGGCATTACCGACGTCGA GCTCGAGAAGGCCAAAAACCGCTTCGTGCGCTCGATAATCTTCGCGCGCGACAGCCAGTCGGGAATGGCCGGCATTTATG GGGCGGCGCTTGCGACAGGCGATACTGCACACGACGTAGAGGCGTGGCCACTTAGGATCCGCGCCGTAAAGGCGGCAGAG GTGCAAGCGGCTGCCAGGAAATACCTCAGTCCCGACCGGTCCGTAGCGGGGTATCTGCTGCCCCGCGAAAGCGCTACCTC AGGAGATAAAAGCCGATGA
Upstream 100 bases:
>100_bases AGTTCGATCCAGGTACTTGAATTTAAACGGGTTTTCCGTGGCACGTATCTTGCTCTGCTGACGTGTCAGCGTCGACGAGA ATTGTGCGGAGAATGTCGAA
Downstream 100 bases:
>100_bases TATCGTTCAGCCGACTGCGCATCGGGGCCAAGCCCTCACTCGTCGTGGCATGCATATTGCTGGGCCTTGCCGCGTGTCCA GCGCTTGCGGGCATGGCCAT
Product: Zn-dependent protease, M16 family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 512; Mature: 511
Protein sequence:
>512_residues MSEPFFRPGSGPAPGHPTAEPWRRRKRWYSPSDGRAGTARSHLPQRSTSHDGVCSRICAFVLCMVALQFLMTSAMAADES PLREAEVANFMLGNGMEVVVIPDHRAPIVTQMIWYKVGNADEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEE NAFTGSDYTAYHQTVTPESLRTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRI PTIGWMHEMEQLNREDALKFYDRYYAPNNAILVVAGDVDAGRVRQLADETFGTLPRGPDLPARVRPQEPEQNTKRIVALT DPRVTVPSFQKSWVTTSYGTAEQGEAEALDILSEILGGGTRSRIYQELVVKQAIASSGGAYFNGRSLDPSSFTVFGSPRG EAKIEEVEDAIDAEIRKIIEFGITDVELEKAKNRFVRSIIFARDSQSGMAGIYGAALATGDTAHDVEAWPLRIRAVKAAE VQAAARKYLSPDRSVAGYLLPRESATSGDKSR
Sequences:
>Translated_512_residues MSEPFFRPGSGPAPGHPTAEPWRRRKRWYSPSDGRAGTARSHLPQRSTSHDGVCSRICAFVLCMVALQFLMTSAMAADES PLREAEVANFMLGNGMEVVVIPDHRAPIVTQMIWYKVGNADEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEE NAFTGSDYTAYHQTVTPESLRTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRI PTIGWMHEMEQLNREDALKFYDRYYAPNNAILVVAGDVDAGRVRQLADETFGTLPRGPDLPARVRPQEPEQNTKRIVALT DPRVTVPSFQKSWVTTSYGTAEQGEAEALDILSEILGGGTRSRIYQELVVKQAIASSGGAYFNGRSLDPSSFTVFGSPRG EAKIEEVEDAIDAEIRKIIEFGITDVELEKAKNRFVRSIIFARDSQSGMAGIYGAALATGDTAHDVEAWPLRIRAVKAAE VQAAARKYLSPDRSVAGYLLPRESATSGDKSR >Mature_511_residues SEPFFRPGSGPAPGHPTAEPWRRRKRWYSPSDGRAGTARSHLPQRSTSHDGVCSRICAFVLCMVALQFLMTSAMAADESP LREAEVANFMLGNGMEVVVIPDHRAPIVTQMIWYKVGNADEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEEN AFTGSDYTAYHQTVTPESLRTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRIP TIGWMHEMEQLNREDALKFYDRYYAPNNAILVVAGDVDAGRVRQLADETFGTLPRGPDLPARVRPQEPEQNTKRIVALTD PRVTVPSFQKSWVTTSYGTAEQGEAEALDILSEILGGGTRSRIYQELVVKQAIASSGGAYFNGRSLDPSSFTVFGSPRGE AKIEEVEDAIDAEIRKIIEFGITDVELEKAKNRFVRSIIFARDSQSGMAGIYGAALATGDTAHDVEAWPLRIRAVKAAEV QAAARKYLSPDRSVAGYLLPRESATSGDKSR
Specific function: Unknown
COG id: COG0612
COG function: function code R; Predicted Zn-dependent peptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M16 family
Homologues:
Organism=Homo sapiens, GI46593007, Length=207, Percent_Identity=29.4685990338164, Blast_Score=97, Evalue=4e-20, Organism=Homo sapiens, GI94538354, Length=222, Percent_Identity=29.2792792792793, Blast_Score=92, Evalue=9e-19, Organism=Homo sapiens, GI155969707, Length=272, Percent_Identity=26.8382352941176, Blast_Score=88, Evalue=2e-17, Organism=Escherichia coli, GI1787770, Length=234, Percent_Identity=28.2051282051282, Blast_Score=89, Evalue=9e-19, Organism=Escherichia coli, GI2367164, Length=212, Percent_Identity=26.4150943396226, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71999683, Length=200, Percent_Identity=25, Blast_Score=81, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17553678, Length=441, Percent_Identity=24.7165532879819, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71994338, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25146563, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI25146566, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI32566665, Length=90, Percent_Identity=40, Blast_Score=69, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17557500, Length=95, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323192, Length=389, Percent_Identity=24.4215938303342, Blast_Score=91, Evalue=4e-19, Organism=Saccharomyces cerevisiae, GI6323421, Length=259, Percent_Identity=23.5521235521236, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI21357875, Length=215, Percent_Identity=28.8372093023256, Blast_Score=99, Evalue=9e-21, Organism=Drosophila melanogaster, GI24646943, Length=215, Percent_Identity=28.8372093023256, Blast_Score=99, Evalue=9e-21, Organism=Drosophila melanogaster, GI221513245, Length=290, Percent_Identity=22.7586206896552, Blast_Score=70, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4WA_RHISN (P55679)
Other databases:
- EMBL: U00090 - RefSeq: NP_444121.1 - ProteinModelPortal: P55679 - SMR: P55679 - GeneID: 962487 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01040 - HOGENOM: HBG634529 - ProtClustDB: CLSK785110 - GO: GO:0006508 - InterPro: IPR011249 - InterPro: IPR011237 - InterPro: IPR011765 - InterPro: IPR001431 - InterPro: IPR007863 - Gene3D: G3DSA:3.30.830.10
Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C; SSF63411 Metalloenz_metal-bd
EC number: 3.4.99.- [C]
Molecular weight: Translated: 56887; Mature: 56756
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: PS00143 INSULINASE
Important sites: ACT_SITE 134-134
Signals:
None
Transmembrane regions:
HASH(0xbd0d00c)-;
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEPFFRPGSGPAPGHPTAEPWRRRKRWYSPSDGRAGTARSHLPQRSTSHDGVCSRICAF CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH VLCMVALQFLMTSAMAADESPLREAEVANFMLGNGMEVVVIPDHRAPIVTQMIWYKVGNA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC DEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEENAFTGSDYTAYHQTVTPESL CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEHCCCCCHHHH RTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRI HHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEC PTIGWMHEMEQLNREDALKFYDRYYAPNNAILVVAGDVDAGRVRQLADETFGTLPRGPDL CCHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC PARVRPQEPEQNTKRIVALTDPRVTVPSFQKSWVTTSYGTAEQGEAEALDILSEILGGGT CCCCCCCCCCCCCCEEEEECCCCEECCCCHHCCEECCCCCCCCCHHHHHHHHHHHHCCCH RSRIYQELVVKQAIASSGGAYFNGRSLDPSSFTVFGSPRGEAKIEEVEDAIDAEIRKIIE HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH FGITDVELEKAKNRFVRSIIFARDSQSGMAGIYGAALATGDTAHDVEAWPLRIRAVKAAE HCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH VQAAARKYLSPDRSVAGYLLPRESATSGDKSR HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH >Mature Secondary Structure SEPFFRPGSGPAPGHPTAEPWRRRKRWYSPSDGRAGTARSHLPQRSTSHDGVCSRICAF CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH VLCMVALQFLMTSAMAADESPLREAEVANFMLGNGMEVVVIPDHRAPIVTQMIWYKVGNA HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCC DEPPGKSGIAHFLEHLMFKGTKKHPSGEFSAKIAEIGGEENAFTGSDYTAYHQTVTPESL CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEHCCCCCHHHH RTMMEFEADRMRHLVLTDAVIVPERDVILEERRWRVENDPEQLLEEEMQATLYQNHPYRI HHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEC PTIGWMHEMEQLNREDALKFYDRYYAPNNAILVVAGDVDAGRVRQLADETFGTLPRGPDL CCHHHHHHHHHHCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC PARVRPQEPEQNTKRIVALTDPRVTVPSFQKSWVTTSYGTAEQGEAEALDILSEILGGGT CCCCCCCCCCCCCCEEEEECCCCEECCCCHHCCEECCCCCCCCCHHHHHHHHHHHHCCCH RSRIYQELVVKQAIASSGGAYFNGRSLDPSSFTVFGSPRGEAKIEEVEDAIDAEIRKIIE HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH FGITDVELEKAKNRFVRSIIFARDSQSGMAGIYGAALATGDTAHDVEAWPLRIRAVKAAE HCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHH VQAAARKYLSPDRSVAGYLLPRESATSGDKSR HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCH
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424