Click here to switch to the map view.

The map label for this gene is fdxB

Identifier: 16520000

GI number: 16520000

Start: 131552

End: 131869

Strand: Reverse

Name: fdxB

Synonym: NGR_a01050

Alternate gene names: 16520000

Gene position: 131869-131552 (Counterclockwise)

Preceding gene: 16519999

Following gene: 16520001

Centisome position: 24.59

GC content: 61.64

Gene sequence:

>318_bases
ATGACAAGTCATTTCGTTACCCGCGACGGCTCCACATGGATGCCGCAGTATCTGACGGCCATTGACGCCATGACGTGCAT
TGGTTGCGGCCGCTGCTTCAAGGTCTGCTCGCGCGAGGTCATGCATCTGCACGGCATCGACGAATCCGGTGAGATCCTCG
GGGCCTGCGATGGCGAGGACGACGACTTCGCTGGCGAGCTCAGTCGCACGATCATGGTTGTCGATCACGCCGGCCGCTGC
ATCGGCTGCGGAGCCTGCGCCCGGGTATGCCCGAAGAACTGCCAGACCCATGTAGCGGCCGACGAAATTGTTGCTTGA

Upstream 100 bases:

>100_bases
GGCGGATGTGACGGATGAGGTCACGTCCGATCTCGGAAGAGATTTTACTTTTTTGCCTGTGGCGGATGCGGAGAGACAGA
TCCTGATTGGAGAACCAACG

Downstream 100 bases:

>100_bases
TCTGACGAACGGACTCCGGAAAACGACTTTGGCCGTTATAAATGCGATCATATTCGAGACGACAGTCCCCAAAGAGCCCT
TGCCGTCGCGCAAGCTGACG

Product: 4Fe-4S ferredoxin

Products: NA

Alternate protein names: Ferredoxin III; FdIII

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTSHFVTRDGSTWMPQYLTAIDAMTCIGCGRCFKVCSREVMHLHGIDESGEILGACDGEDDDFAGELSRTIMVVDHAGRC
IGCGACARVCPKNCQTHVAADEIVA

Sequences:

>Translated_105_residues
MTSHFVTRDGSTWMPQYLTAIDAMTCIGCGRCFKVCSREVMHLHGIDESGEILGACDGEDDDFAGELSRTIMVVDHAGRC
IGCGACARVCPKNCQTHVAADEIVA
>Mature_104_residues
TSHFVTRDGSTWMPQYLTAIDAMTCIGCGRCFKVCSREVMHLHGIDESGEILGACDGEDDDFAGELSRTIMVVDHAGRCI
GCGACARVCPKNCQTHVAADEIVA

Specific function: Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): FER3_RHISN (P55678)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444120.1
- ProteinModelPortal:   P55678
- SMR:   P55678
- GeneID:   962493
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01050
- HOGENOM:   HBG734156
- ProtClustDB:   CLSK784567
- GO:   GO:0006810
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR014283
- InterPro:   IPR012285
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR02936

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11270; Mature: 11139

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
14.3 %Cys+Met (Translated Protein)
9.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
13.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHFVTRDGSTWMPQYLTAIDAMTCIGCGRCFKVCSREVMHLHGIDESGEILGACDGED
CCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
DDFAGELSRTIMVVDHAGRCIGCGACARVCPKNCQTHVAADEIVA
CCHHHHHHHEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure 
TSHFVTRDGSTWMPQYLTAIDAMTCIGCGRCFKVCSREVMHLHGIDESGEILGACDGED
CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCC
DDFAGELSRTIMVVDHAGRCIGCGACARVCPKNCQTHVAADEIVA
CCHHHHHHHEEEEEECCCCEECCCHHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424