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Identifier: 16519974

GI number: 16519974

Start: 160257

End: 161801

Strand: Direct

Name: Not Available

Synonym: NGR_a01310

Alternate gene names: NA

Gene position: 160257-161801 (Clockwise)

Preceding gene: 16519975

Following gene: 16519973

Centisome position: 29.89

GC content: 59.09

Gene sequence:

>1545_bases
TTGCCGACGAGGAGACTCCTGATGCGCCAGGTGCGCGAGATTTTGAAACTGCGGCTGGATGTCGGTCTTTCGAACCGCAT
CATTGCCAAGCAACTGGGCGTCGGGGAGACTTCGGTCCGCGACACGTTAAAGCGATTGCACCGGGAAGGACTGACATGGC
CTTTACCGGATACGATCAGTGACCGCGAGCTGGAGCAGCGCCTTTACGGGACGCCCGGTAAGAAAGCTGGGCGTCGGAAG
CAGTCCGAGCCCGACTGGTCTGCCGTCGCGCGCGAATTGAAGCGCAAGCATGTGACGTTGCAGGTGCTCTGGGAGGAGTA
CATTGCTCGGGATCCAGACGGGTTCCGATATTCGAGATACTGTGAGTTGTTCCGAAACTGGCATGGCCGGCTGCCTCTGG
TGATGCGGCAAAGCCATGCCGGCGGCGAGAAGCTGTTTGTCGATTATGCCGGTGACAAGGTGGCAGTCGTCGACCGCAAA
ACCGGCGTGGTGCGGGACGCACATATCTTCGTGGCGGTGATGGGGGCGTCCAGCCTGTCGTTCGCGCTGGCGACGTGGAG
CGAACAGTTGCCCGACTGGATCGAGGCGCACAACGCAGCCTACCGGTTTTTTGGTGGGGTGACGCAACTCCTGGTCAGCG
ACAACACCAAATGCGCGGTGATCAAGGCTTGTCACTTCGATCCGATGGTCAATCGTTCCTATACGGATATGGCGCGCCAT
TACAGCACGGCAGTTTTTCCAGCACGCCCGAGAAAACCGAGGGACAAGGCAAAAGTCGAAAATTGCGTCGGAATCGTAGA
GCGTTGGCTTCTGGGTCGGCTGCGGAACCGGACCTTTTATAGCCTCGCTGATCTCAACAAGGCCATTGCCGATCTGATCA
CCCGGCTCAATGACGAACGGGTGATACGCCAGTACGGCAAGACGCGGCGCGCGTTGTTTGACGAACTTGATGCCCCGAAT
CTGAAGCCGCTACCTGCCGAGCCCTGGGTGCATGCGGAATGGCGTCGGTGTCGTGTTGGCATCGATTATCATATTGAACT
CAGTCGGCATTTTTATTCCGTCCCTTACCGCTTTGCGCGTAGCGAAGTCGAGGTTCGATACACCATTCGCACGGTGGAAA
TATTCCTCGGCGGCGACCGAATTGCCGCGCATGTGCGTGGCAGCAGCAACGGCCGCCACACGACGGTTGCGGTGCATATG
CCGCCAAACCATCAGCGTTATCGCGAATGGACGCCGGCGAAGATCCGCAGCGAGGCCAAGCGGATCGGGCCGATGCTGCG
CGTTCTCGTCGATCGGATCATTGAGAAGCGCGCGCATCCCGAACAGGGATACCGTGCCTGTGTCGGCATCATCGGCCTGG
AAAGACGGTTTGGCGTCGATCGCCTTGAAGCGGCTGCGCAGCGCGCGCTGGAATTCCAGGTGCTCAACTATCCCGGCATC
AAATCCATTCTCGAAAAGGAACTCGACCGCCTCCCAAGGTCCGAGCGCCTCGAGCAGGAACCGATCCAGCATTCCAACCT
CCGCGGCTCCGAATACTACCATTGA

Upstream 100 bases:

>100_bases
GCGCAGCATTCCGAGATAATCGCGCGCAGTAAGTCGATATCGTGAGGCCCGATCGTTGGGGTTATTTCTCCAGGTGGAAG
CAACGCCATGGAGAAGTGAA

Downstream 100 bases:

>100_bases
AAGGAATAAAAATGCTCAAACATCCTACCCTCAACCTGCTGCAGCAATTGGGGCTTGCCGGTATGGCAGACGCCTTCACA
AGACTGGCCGATAATGACGA

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MPTRRLLMRQVREILKLRLDVGLSNRIIAKQLGVGETSVRDTLKRLHREGLTWPLPDTISDRELEQRLYGTPGKKAGRRK
QSEPDWSAVARELKRKHVTLQVLWEEYIARDPDGFRYSRYCELFRNWHGRLPLVMRQSHAGGEKLFVDYAGDKVAVVDRK
TGVVRDAHIFVAVMGASSLSFALATWSEQLPDWIEAHNAAYRFFGGVTQLLVSDNTKCAVIKACHFDPMVNRSYTDMARH
YSTAVFPARPRKPRDKAKVENCVGIVERWLLGRLRNRTFYSLADLNKAIADLITRLNDERVIRQYGKTRRALFDELDAPN
LKPLPAEPWVHAEWRRCRVGIDYHIELSRHFYSVPYRFARSEVEVRYTIRTVEIFLGGDRIAAHVRGSSNGRHTTVAVHM
PPNHQRYREWTPAKIRSEAKRIGPMLRVLVDRIIEKRAHPEQGYRACVGIIGLERRFGVDRLEAAAQRALEFQVLNYPGI
KSILEKELDRLPRSERLEQEPIQHSNLRGSEYYH

Sequences:

>Translated_514_residues
MPTRRLLMRQVREILKLRLDVGLSNRIIAKQLGVGETSVRDTLKRLHREGLTWPLPDTISDRELEQRLYGTPGKKAGRRK
QSEPDWSAVARELKRKHVTLQVLWEEYIARDPDGFRYSRYCELFRNWHGRLPLVMRQSHAGGEKLFVDYAGDKVAVVDRK
TGVVRDAHIFVAVMGASSLSFALATWSEQLPDWIEAHNAAYRFFGGVTQLLVSDNTKCAVIKACHFDPMVNRSYTDMARH
YSTAVFPARPRKPRDKAKVENCVGIVERWLLGRLRNRTFYSLADLNKAIADLITRLNDERVIRQYGKTRRALFDELDAPN
LKPLPAEPWVHAEWRRCRVGIDYHIELSRHFYSVPYRFARSEVEVRYTIRTVEIFLGGDRIAAHVRGSSNGRHTTVAVHM
PPNHQRYREWTPAKIRSEAKRIGPMLRVLVDRIIEKRAHPEQGYRACVGIIGLERRFGVDRLEAAAQRALEFQVLNYPGI
KSILEKELDRLPRSERLEQEPIQHSNLRGSEYYH
>Mature_513_residues
PTRRLLMRQVREILKLRLDVGLSNRIIAKQLGVGETSVRDTLKRLHREGLTWPLPDTISDRELEQRLYGTPGKKAGRRKQ
SEPDWSAVARELKRKHVTLQVLWEEYIARDPDGFRYSRYCELFRNWHGRLPLVMRQSHAGGEKLFVDYAGDKVAVVDRKT
GVVRDAHIFVAVMGASSLSFALATWSEQLPDWIEAHNAAYRFFGGVTQLLVSDNTKCAVIKACHFDPMVNRSYTDMARHY
STAVFPARPRKPRDKAKVENCVGIVERWLLGRLRNRTFYSLADLNKAIADLITRLNDERVIRQYGKTRRALFDELDAPNL
KPLPAEPWVHAEWRRCRVGIDYHIELSRHFYSVPYRFARSEVEVRYTIRTVEIFLGGDRIAAHVRGSSNGRHTTVAVHMP
PNHQRYREWTPAKIRSEAKRIGPMLRVLVDRIIEKRAHPEQGYRACVGIIGLERRFGVDRLEAAAQRALEFQVLNYPGIK
SILEKELDRLPRSERLEQEPIQHSNLRGSEYYH

Specific function: Unknown

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4UI_RHISN (Q53201)

Other databases:

- EMBL:   Z68203
- EMBL:   U00090
- RefSeq:   NP_444094.1
- GeneID:   962465
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01310
- HOGENOM:   HBG515540
- ProtClustDB:   CLSK800659
- GO:   GO:0032196
- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR012337

Pfam domain/function: PF00665 rve; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 59625; Mature: 59494

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50532 HTH_IS408; PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTRRLLMRQVREILKLRLDVGLSNRIIAKQLGVGETSVRDTLKRLHREGLTWPLPDTIS
CCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DRELEQRLYGTPGKKAGRRKQSEPDWSAVARELKRKHVTLQVLWEEYIARDPDGFRYSRY
HHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
CELFRNWHGRLPLVMRQSHAGGEKLFVDYAGDKVAVVDRKTGVVRDAHIFVAVMGASSLS
HHHHHHHCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEHEEEEEEECCCHHH
FALATWSEQLPDWIEAHNAAYRFFGGVTQLLVSDNTKCAVIKACHFDPMVNRSYTDMARH
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH
YSTAVFPARPRKPRDKAKVENCVGIVERWLLGRLRNRTFYSLADLNKAIADLITRLNDER
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
VIRQYGKTRRALFDELDAPNLKPLPAEPWVHAEWRRCRVGIDYHIELSRHFYSVPYRFAR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCEEEEEECHHHHHCCHHHHC
SEVEVRYTIRTVEIFLGGDRIAAHVRGSSNGRHTTVAVHMPPNHQRYREWTPAKIRSEAK
CCEEEEEEEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHH
RIGPMLRVLVDRIIEKRAHPEQGYRACVGIIGLERRFGVDRLEAAAQRALEFQVLNYPGI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCH
KSILEKELDRLPRSERLEQEPIQHSNLRGSEYYH
HHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCC
>Mature Secondary Structure 
PTRRLLMRQVREILKLRLDVGLSNRIIAKQLGVGETSVRDTLKRLHREGLTWPLPDTIS
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
DRELEQRLYGTPGKKAGRRKQSEPDWSAVARELKRKHVTLQVLWEEYIARDPDGFRYSRY
HHHHHHHHCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
CELFRNWHGRLPLVMRQSHAGGEKLFVDYAGDKVAVVDRKTGVVRDAHIFVAVMGASSLS
HHHHHHHCCCCCEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEHEEEEEEECCCHHH
FALATWSEQLPDWIEAHNAAYRFFGGVTQLLVSDNTKCAVIKACHFDPMVNRSYTDMARH
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHH
YSTAVFPARPRKPRDKAKVENCVGIVERWLLGRLRNRTFYSLADLNKAIADLITRLNDER
HHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHH
VIRQYGKTRRALFDELDAPNLKPLPAEPWVHAEWRRCRVGIDYHIELSRHFYSVPYRFAR
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCEEEEEECHHHHHCCHHHHC
SEVEVRYTIRTVEIFLGGDRIAAHVRGSSNGRHTTVAVHMPPNHQRYREWTPAKIRSEAK
CCEEEEEEEEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHH
RIGPMLRVLVDRIIEKRAHPEQGYRACVGIIGLERRFGVDRLEAAAQRALEFQVLNYPGI
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEECCCCH
KSILEKELDRLPRSERLEQEPIQHSNLRGSEYYH
HHHHHHHHHHCCCHHHHHHCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424