Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519910
GI number: 16519910
Start: 251811
End: 253562
Strand: Direct
Name: Not Available
Synonym: NGR_a01950
Alternate gene names: NA
Gene position: 251811-253562 (Clockwise)
Preceding gene: 16519911
Following gene: 16519909
Centisome position: 46.97
GC content: 58.62
Gene sequence:
>1752_bases ATGAAGCCATACACCGACTTTGAGCCACCTCCTGCTCTTGCTGTCACACCAGCAGGGCGCAGGAGGCTGGCGGAACTTCA AAAGCTTCATTCTGCTGCTGGAGAGAGCCTCCTCGTAGATGAAGAGGCGGCGGCTGCCGGAATCCTTCGAATCGAGTTTT CATGGCCATTGAACGACGGAAGAACGATTGGGCTGCGGGCAGTTTATCCAGATACCTTTCCACGCCTGCGCCCCCATGTT TTTCTGACCTGCGACCCATCCGAATATCCTGAGCGGCACTGTGGATCCGAAGGAGCTCTTTGTCTGCTGGGGCGCGATAC CCGCTATTGGCAGGCCAACATGTCATTGGCGGAACTCCTCGACGAAAACCTCGCGCATGTCCTGGACGGCACGGGAGCGG AGGATCCACAAGGAGAGCCGATCGAGTATTGGTGGAACAGCCTCGGCCAAGCGAGCGGAAGCTTCGTCCTCGTTGACTCC AGATGGAAGCTCTCCGGCTATGACGAAGGGACTGTCGATGTCCTCGTGAACGCAAGCCGGACAGAAATCGGCCGGACCAT CAGGGCTGCGATCTTAAGCGTCAGGGCCGGTGACGGTAGTCTTTTGGGGGAGCGTGTTGCGCCTCTTCCTGCCGCCGTTT CTTCGACTGCCATTCGCGCCTTCCCTTGGCGGCGGGACGACCAACTTTCCCTACCAACAGGTTCTGCTGAACAGACGGTC GGCAAAGTCGCGTACGGGAAAACATATGTGACATGCGACGGAGCAGATATCCGGCTCTCATTCACGATCAGCAGGACCGA ACTTCAACACAACGAGCATGGAGATGCTTGGGTGTGCGGAATGGCGGTAAGAGAGCACATTTCACACTCAAGTCGTAGGG GACCACGACGTAAAGACACGGTCCCGTCCATCGTGCCTGTTTTTCGGGACGGCGAGATAGACATCGGCTATCGAGTTCCA TCGGTCGCGAGTCTGAGAGGCAAACGCATTGCGGTTGTCGGGCTCGGGGCGCTGGGATCACCCGCTGCCGTCGAACTGGC TAGAAACGGCTGCACCTCGCTCCACCTGATGGACGACGACGTCGTCGAACCGGGCAACACGATCCGTTGGGAACTTGGAG CCAGTAGTTGGGGAACGAAGAAGCAGGACGCCTTGAAGCGGTTCATCGAACGGGAATTTCCATGGACGTCCGTTCTGGCC GTCCCGCACCGCATTGGATTACCAAACTGCGATCCGCACATTCCCGGAGAAACAGATCGGCTGAACGAGTTATTAGACAG CGTCGATCTCGTTGTGGACGCCAGTGCCGCGCCGGGCGTTACCTACCTTCTCGGCGACATCTGCCGGGAGCGTGGCCTTT CGCTCATCTCCGTTTTCGCCTCACCCAACCTGCATGGCGGGGCGGTCGTATTCCATCATCCGGAATCCGGTTGTCCGGTG TGCATGGCGCACGCCAACGAGACCCCGGAAGGAAAGTCGGGGCACATCCCCTATCCGAACGGCATGAATGACGAATCAAC GCTCGTTCAGCCACCCGGTTGCTCCGAGCTCACCTTCACCGGAGCTTCATTCGACCTGAAGGAACTGTCCTTGGAGACCG TCCGGATGGCCGTCGATGTCCTGTCTAGCCCGGATGAGTGGACGGTATCCGAGGTCCGCACAGTCAATCTGCATAACGTA AAACGTCGTATGCCGCCGAGTTGGCGGATCGATCCACTGGAACGACACCCGGACTGCGGATGCCGAAGCTGA
Upstream 100 bases:
>100_bases ATCCCGATCATCCTGGTCATCCCGGTCATCCGCCTGGTCCGCCGAATCATCCGGGTCCAAGCGTTCCACCCAAAGTGCCT CCGAAGCACGTTGGTTGAAC
Downstream 100 bases:
>100_bases TTTGGATACCGGAGTCCGTCGTCGAAGCGATGCTGAAAGACGCGAGCCGTTGGCACGACCTCGAAACAGGCGGGACCTTT ATGGGATACTGGTCGGACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 583; Mature: 583
Protein sequence:
>583_residues MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV KRRMPPSWRIDPLERHPDCGCRS
Sequences:
>Translated_583_residues MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV KRRMPPSWRIDPLERHPDCGCRS >Mature_583_residues MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV KRRMPPSWRIDPLERHPDCGCRS
Specific function: Unknown
COG id: COG0476
COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QC_RHISN (P55624)
Other databases:
- EMBL: U00090 - RefSeq: NP_444030.1 - ProteinModelPortal: P55624 - SMR: P55624 - GeneID: 962194 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01950 - ProtClustDB: CLSK563539 - GO: GO:0005488 - InterPro: IPR009036 - InterPro: IPR016040 - InterPro: IPR000594 - Gene3D: G3DSA:3.40.50.720
Pfam domain/function: PF00899 ThiF; SSF69572 MoeB
EC number: NA
Molecular weight: Translated: 63587; Mature: 63587
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDG CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC RTIGLRAVYPDTFPRLRPHVFLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELL CEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEECCCCEEECCCHHHHHH DENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDSRWKLSGYDEGTVDVLVNASR HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCEEEEEECCH TEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV HHHHHHHHHHHHEEECCCCCHHHHHHCCCCHHHHCCHHEECCCCCCCCCCCCCCCHHHHH GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDT HHEEECCEEEEECCCEEEEEEEEEHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCC VPSIVPVFRDGEIDIGYRVPSVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDD CCCCEEEEECCCEEECEECCCHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCC VVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLAVPHRIGLPNCDPHIPGETDR CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHEEECHHHCCCCCCCCCCCCCHHH LNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV HHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCE CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDV EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHH LSSPDEWTVSEVRTVNLHNVKRRMPPSWRIDPLERHPDCGCRS HCCCCCEEHHHEEEECHHHHHHHCCCCCCCCHHHCCCCCCCCC >Mature Secondary Structure MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDG CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC RTIGLRAVYPDTFPRLRPHVFLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELL CEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEECCCCEEECCCHHHHHH DENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDSRWKLSGYDEGTVDVLVNASR HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCEEEEEECCH TEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV HHHHHHHHHHHHEEECCCCCHHHHHHCCCCHHHHCCHHEECCCCCCCCCCCCCCCHHHHH GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDT HHEEECCEEEEECCCEEEEEEEEEHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCC VPSIVPVFRDGEIDIGYRVPSVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDD CCCCEEEEECCCEEECEECCCHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCC VVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLAVPHRIGLPNCDPHIPGETDR CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHEEECHHHCCCCCCCCCCCCCHHH LNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV HHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCE CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDV EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHH LSSPDEWTVSEVRTVNLHNVKRRMPPSWRIDPLERHPDCGCRS HCCCCCEEHHHEEEECHHHHHHHCCCCCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424