Definition Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence.
Accession NC_000914
Length 536,165

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Identifier: 16519910

GI number: 16519910

Start: 251811

End: 253562

Strand: Direct

Name: Not Available

Synonym: NGR_a01950

Alternate gene names: NA

Gene position: 251811-253562 (Clockwise)

Preceding gene: 16519911

Following gene: 16519909

Centisome position: 46.97

GC content: 58.62

Gene sequence:

>1752_bases
ATGAAGCCATACACCGACTTTGAGCCACCTCCTGCTCTTGCTGTCACACCAGCAGGGCGCAGGAGGCTGGCGGAACTTCA
AAAGCTTCATTCTGCTGCTGGAGAGAGCCTCCTCGTAGATGAAGAGGCGGCGGCTGCCGGAATCCTTCGAATCGAGTTTT
CATGGCCATTGAACGACGGAAGAACGATTGGGCTGCGGGCAGTTTATCCAGATACCTTTCCACGCCTGCGCCCCCATGTT
TTTCTGACCTGCGACCCATCCGAATATCCTGAGCGGCACTGTGGATCCGAAGGAGCTCTTTGTCTGCTGGGGCGCGATAC
CCGCTATTGGCAGGCCAACATGTCATTGGCGGAACTCCTCGACGAAAACCTCGCGCATGTCCTGGACGGCACGGGAGCGG
AGGATCCACAAGGAGAGCCGATCGAGTATTGGTGGAACAGCCTCGGCCAAGCGAGCGGAAGCTTCGTCCTCGTTGACTCC
AGATGGAAGCTCTCCGGCTATGACGAAGGGACTGTCGATGTCCTCGTGAACGCAAGCCGGACAGAAATCGGCCGGACCAT
CAGGGCTGCGATCTTAAGCGTCAGGGCCGGTGACGGTAGTCTTTTGGGGGAGCGTGTTGCGCCTCTTCCTGCCGCCGTTT
CTTCGACTGCCATTCGCGCCTTCCCTTGGCGGCGGGACGACCAACTTTCCCTACCAACAGGTTCTGCTGAACAGACGGTC
GGCAAAGTCGCGTACGGGAAAACATATGTGACATGCGACGGAGCAGATATCCGGCTCTCATTCACGATCAGCAGGACCGA
ACTTCAACACAACGAGCATGGAGATGCTTGGGTGTGCGGAATGGCGGTAAGAGAGCACATTTCACACTCAAGTCGTAGGG
GACCACGACGTAAAGACACGGTCCCGTCCATCGTGCCTGTTTTTCGGGACGGCGAGATAGACATCGGCTATCGAGTTCCA
TCGGTCGCGAGTCTGAGAGGCAAACGCATTGCGGTTGTCGGGCTCGGGGCGCTGGGATCACCCGCTGCCGTCGAACTGGC
TAGAAACGGCTGCACCTCGCTCCACCTGATGGACGACGACGTCGTCGAACCGGGCAACACGATCCGTTGGGAACTTGGAG
CCAGTAGTTGGGGAACGAAGAAGCAGGACGCCTTGAAGCGGTTCATCGAACGGGAATTTCCATGGACGTCCGTTCTGGCC
GTCCCGCACCGCATTGGATTACCAAACTGCGATCCGCACATTCCCGGAGAAACAGATCGGCTGAACGAGTTATTAGACAG
CGTCGATCTCGTTGTGGACGCCAGTGCCGCGCCGGGCGTTACCTACCTTCTCGGCGACATCTGCCGGGAGCGTGGCCTTT
CGCTCATCTCCGTTTTCGCCTCACCCAACCTGCATGGCGGGGCGGTCGTATTCCATCATCCGGAATCCGGTTGTCCGGTG
TGCATGGCGCACGCCAACGAGACCCCGGAAGGAAAGTCGGGGCACATCCCCTATCCGAACGGCATGAATGACGAATCAAC
GCTCGTTCAGCCACCCGGTTGCTCCGAGCTCACCTTCACCGGAGCTTCATTCGACCTGAAGGAACTGTCCTTGGAGACCG
TCCGGATGGCCGTCGATGTCCTGTCTAGCCCGGATGAGTGGACGGTATCCGAGGTCCGCACAGTCAATCTGCATAACGTA
AAACGTCGTATGCCGCCGAGTTGGCGGATCGATCCACTGGAACGACACCCGGACTGCGGATGCCGAAGCTGA

Upstream 100 bases:

>100_bases
ATCCCGATCATCCTGGTCATCCCGGTCATCCGCCTGGTCCGCCGAATCATCCGGGTCCAAGCGTTCCACCCAAAGTGCCT
CCGAAGCACGTTGGTTGAAC

Downstream 100 bases:

>100_bases
TTTGGATACCGGAGTCCGTCGTCGAAGCGATGCTGAAAGACGCGAGCCGTTGGCACGACCTCGAAACAGGCGGGACCTTT
ATGGGATACTGGTCGGACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV
FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS
RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV
GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP
SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA
VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV
CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV
KRRMPPSWRIDPLERHPDCGCRS

Sequences:

>Translated_583_residues
MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV
FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS
RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV
GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP
SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA
VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV
CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV
KRRMPPSWRIDPLERHPDCGCRS
>Mature_583_residues
MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDGRTIGLRAVYPDTFPRLRPHV
FLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELLDENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDS
RWKLSGYDEGTVDVLVNASRTEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV
GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDTVPSIVPVFRDGEIDIGYRVP
SVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDDVVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLA
VPHRIGLPNCDPHIPGETDRLNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV
CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDVLSSPDEWTVSEVRTVNLHNV
KRRMPPSWRIDPLERHPDCGCRS

Specific function: Unknown

COG id: COG0476

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4QC_RHISN (P55624)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_444030.1
- ProteinModelPortal:   P55624
- SMR:   P55624
- GeneID:   962194
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a01950
- ProtClustDB:   CLSK563539
- GO:   GO:0005488
- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594
- Gene3D:   G3DSA:3.40.50.720

Pfam domain/function: PF00899 ThiF; SSF69572 MoeB

EC number: NA

Molecular weight: Translated: 63587; Mature: 63587

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDG
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC
RTIGLRAVYPDTFPRLRPHVFLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELL
CEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEECCCCEEECCCHHHHHH
DENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDSRWKLSGYDEGTVDVLVNASR
HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCEEEEEECCH
TEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV
HHHHHHHHHHHHEEECCCCCHHHHHHCCCCHHHHCCHHEECCCCCCCCCCCCCCCHHHHH
GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDT
HHEEECCEEEEECCCEEEEEEEEEHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCC
VPSIVPVFRDGEIDIGYRVPSVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDD
CCCCEEEEECCCEEECEECCCHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCC
VVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLAVPHRIGLPNCDPHIPGETDR
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHEEECHHHCCCCCCCCCCCCCHHH
LNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV
HHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCE
CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDV
EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
LSSPDEWTVSEVRTVNLHNVKRRMPPSWRIDPLERHPDCGCRS
HCCCCCEEHHHEEEECHHHHHHHCCCCCCCCHHHCCCCCCCCC
>Mature Secondary Structure
MKPYTDFEPPPALAVTPAGRRRLAELQKLHSAAGESLLVDEEAAAAGILRIEFSWPLNDG
CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEEECCCCCC
RTIGLRAVYPDTFPRLRPHVFLTCDPSEYPERHCGSEGALCLLGRDTRYWQANMSLAELL
CEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHCCCCCCEEEEECCCCEEECCCHHHHHH
DENLAHVLDGTGAEDPQGEPIEYWWNSLGQASGSFVLVDSRWKLSGYDEGTVDVLVNASR
HHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCEEECCCCCCCEEEEEECCH
TEIGRTIRAAILSVRAGDGSLLGERVAPLPAAVSSTAIRAFPWRRDDQLSLPTGSAEQTV
HHHHHHHHHHHHEEECCCCCHHHHHHCCCCHHHHCCHHEECCCCCCCCCCCCCCCHHHHH
GKVAYGKTYVTCDGADIRLSFTISRTELQHNEHGDAWVCGMAVREHISHSSRRGPRRKDT
HHEEECCEEEEECCCEEEEEEEEEHHHHCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCC
VPSIVPVFRDGEIDIGYRVPSVASLRGKRIAVVGLGALGSPAAVELARNGCTSLHLMDDD
CCCCEEEEECCCEEECEECCCHHHCCCCEEEEEEECCCCCCHHHHHHHCCCCEEEEECCC
VVEPGNTIRWELGASSWGTKKQDALKRFIEREFPWTSVLAVPHRIGLPNCDPHIPGETDR
CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHEEECHHHCCCCCCCCCCCCCHHH
LNELLDSVDLVVDASAAPGVTYLLGDICRERGLSLISVFASPNLHGGAVVFHHPESGCPV
HHHHHHHHHEEEECCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCE
CMAHANETPEGKSGHIPYPNGMNDESTLVQPPGCSELTFTGASFDLKELSLETVRMAVDV
EEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
LSSPDEWTVSEVRTVNLHNVKRRMPPSWRIDPLERHPDCGCRS
HCCCCCEEHHHEEEECHHHHHHHCCCCCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424