Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519909
GI number: 16519909
Start: 253550
End: 254044
Strand: Direct
Name: Not Available
Synonym: NGR_a01960
Alternate gene names: NA
Gene position: 253550-254044 (Clockwise)
Preceding gene: 16519910
Following gene: 16519907
Centisome position: 47.29
GC content: 58.59
Gene sequence:
>495_bases ATGCCGAAGCTGATTTGGATACCGGAGTCCGTCGTCGAAGCGATGCTGAAAGACGCGAGCCGTTGGCACGACCTCGAAAC AGGCGGGACCTTTATGGGATACTGGTCGGACGCGAATGTCGCGGTAATCACGAAGATGATTGACGGCGGATCGGAAGCGA TCCGCACACGCAAAAGCTTTTCCCCGGACCGTGAATGGGAGCAATCCGAGATCGACCGTCATTATCGCGTGTCAGGCCGT GTAGACACCTACATTGGCGACTGGCACACGCATCCGAACGCTCAGAGCGGCGAACCAAGCTGGACCGACCGTCGCTGCCT CAGAACGATCATCCGCTCTCCAGAAGCGCGAGCGCCCAGACCAGTCATGATCCTCCTATGTGGCGGACCCGAGAACTGGC TGCCTCATGCCTGGATCGGACAATTAACACGTCGGGCGCTTCTCTTCGAAAGGGTGGAAACCACCGCGGCCACGATCTCC ACCTACAAGACCTAG
Upstream 100 bases:
>100_bases GGACGGTATCCGAGGTCCGCACAGTCAATCTGCATAACGTAAAACGTCGTATGCCGCCGAGTTGGCGGATCGATCCACTG GAACGACACCCGGACTGCGG
Downstream 100 bases:
>100_bases CTGAACTCTACCGTGTCGGCGAGTGTTATCAGCCGCCCATCGTGCAAGTAGGGTGGAGCGTCCTTGATGCCACGCAGCGT CGCGGTGTGAAGGTTTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MPKLIWIPESVVEAMLKDASRWHDLETGGTFMGYWSDANVAVITKMIDGGSEAIRTRKSFSPDREWEQSEIDRHYRVSGR VDTYIGDWHTHPNAQSGEPSWTDRRCLRTIIRSPEARAPRPVMILLCGGPENWLPHAWIGQLTRRALLFERVETTAATIS TYKT
Sequences:
>Translated_164_residues MPKLIWIPESVVEAMLKDASRWHDLETGGTFMGYWSDANVAVITKMIDGGSEAIRTRKSFSPDREWEQSEIDRHYRVSGR VDTYIGDWHTHPNAQSGEPSWTDRRCLRTIIRSPEARAPRPVMILLCGGPENWLPHAWIGQLTRRALLFERVETTAATIS TYKT >Mature_163_residues PKLIWIPESVVEAMLKDASRWHDLETGGTFMGYWSDANVAVITKMIDGGSEAIRTRKSFSPDREWEQSEIDRHYRVSGRV DTYIGDWHTHPNAQSGEPSWTDRRCLRTIIRSPEARAPRPVMILLCGGPENWLPHAWIGQLTRRALLFERVETTAATIST YKT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4QB_RHISN (P55623)
Other databases:
- EMBL: U00090 - RefSeq: NP_444029.1 - GeneID: 962404 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a01960 - ProtClustDB: CLSK563543 - InterPro: IPR011952 - InterPro: IPR000555 - PIRSF: PIRSF028170 - TIGRFAMs: TIGR02256
Pfam domain/function: PF01398 Mov34
EC number: NA
Molecular weight: Translated: 18796; Mature: 18665
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKLIWIPESVVEAMLKDASRWHDLETGGTFMGYWSDANVAVITKMIDGGSEAIRTRKSF CCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCC SPDREWEQSEIDRHYRVSGRVDTYIGDWHTHPNAQSGEPSWTDRRCLRTIIRSPEARAPR CCCCCCCHHHHHHEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC PVMILLCGGPENWLPHAWIGQLTRRALLFERVETTAATISTYKT CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PKLIWIPESVVEAMLKDASRWHDLETGGTFMGYWSDANVAVITKMIDGGSEAIRTRKSF CCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCC SPDREWEQSEIDRHYRVSGRVDTYIGDWHTHPNAQSGEPSWTDRRCLRTIIRSPEARAPR CCCCCCCHHHHHHEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC PVMILLCGGPENWLPHAWIGQLTRRALLFERVETTAATISTYKT CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424