Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519904
GI number: 16519904
Start: 265859
End: 266128
Strand: Direct
Name: Not Available
Synonym: NGR_a02010
Alternate gene names: NA
Gene position: 265859-266128 (Clockwise)
Preceding gene: 16519907
Following gene: 16519903
Centisome position: 49.59
GC content: 61.48
Gene sequence:
>270_bases GTGCGTATAGAGTTCGAGGTCACGCACCCGTTCCATCCGTGGCGCGGCCAGCGCTTCGTGTTGTCGACACGCAAGCAGAA CTGGGGCGAGGATCGCGTCATGTTCTACGACGCGGATGGGCGGCTTCGCTCGCTGCTTGCGTCATGGACGGACGTCGCTG CACCCGATGTTTTCATTCAGATCGCGGCCGGTAGGTCGTTCGTGCGTCCAGATGATCTGGCAACCCTAGCCGCATTGATC GAGCAAATCGAGCGCAGCCATGGCGGCTGA
Upstream 100 bases:
>100_bases TGGCGCAATCGGCCAAGTAGCCAGCGCTCGACAATGCGAACCGCGGCTTCGACTTTTGCCTTCTTTCAAGTCCAGGACTG CAGTTCGTACTGACACTCAA
Downstream 100 bases:
>100_bases ATGCGTGTCAGGCAATTTATGCCGATTATGTAAATCTAATTATGCCGAATCATACGGGCGCTCACAGCGATAATTGCCTC TACATTGTAGTTATATGCAG
Product: transposase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 89; Mature: 89
Protein sequence:
>89_residues MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQIAAGRSFVRPDDLATLAALI EQIERSHGG
Sequences:
>Translated_89_residues MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQIAAGRSFVRPDDLATLAALI EQIERSHGG >Mature_89_residues MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQIAAGRSFVRPDDLATLAALI EQIERSHGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To Rhizobium NGR234A y4oN
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4BD_RHISN (P55371)
Other databases:
- EMBL: U00090 - EMBL: U00090 - RefSeq: NP_443782.1 - RefSeq: NP_444024.1 - RefSeq: YP_002822311.1 - RefSeq: YP_002822375.1 - RefSeq: YP_002823136.1 - RefSeq: YP_002823203.1 - RefSeq: YP_002823711.1 - RefSeq: YP_002823881.1 - RefSeq: YP_002826117.1 - GeneID: 7788055 - GeneID: 7788666 - GeneID: 7788736 - GeneID: 7789000 - GeneID: 7789627 - GeneID: 7789694 - GeneID: 7793470 - GeneID: 962312 - GeneID: 962399 - GenomeReviews: U00090_GR - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00250 - KEGG: rhi:NGR_a02010 - HOGENOM: HBG372861 - ProtClustDB: CLSK2301966
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10228; Mature: 10228
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQ CEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE IAAGRSFVRPDDLATLAALIEQIERSHGG ECCCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRIEFEVTHPFHPWRGQRFVLSTRKQNWGEDRVMFYDADGRLRSLLASWTDVAAPDVFIQ CEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEE IAAGRSFVRPDDLATLAALIEQIERSHGG ECCCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424