Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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Identifier: 16519802
GI number: 16519802
Start: 393433
End: 394095
Strand: Reverse
Name: Not Available
Synonym: NGR_a03030
Alternate gene names: NA
Gene position: 394095-393433 (Counterclockwise)
Preceding gene: 16519801
Following gene: 16519807
Centisome position: 73.5
GC content: 58.82
Gene sequence:
>663_bases GTGCAGGGCCAGGATCTCGCGATGCTTCCGGAAATCAGGCTGATGGGTGACGTCGATGTAGCCGCGCTGTCGCCACTGTT TCGTGGCATGGTCATGACTGTTTCCTACGCCGAGACCCAAGGAGGGATCGGTCTGACCGCGTCGGGGGCGATGAACCGCA AGTTCGTCCACTGGGCCGCTGTTCACTTCGATTGGCCCGGCCACACGTCGGACGACTTGTACAGCGTCAGCAAGGTTCTG AACGAAGCCGATATGCCGCCGCTTTTGGTCGTCCGCGACATGCTCAAGCACTTGCGGCTTCTTCGGCGGCGAAAGGACGT ACTGGTACCAACCCAACGCGGCCGAGACTTTCTGGTGAGACCGCAGGCCTTCTTCGATCTGATCGCGACGGATTATCTTT ATGCTTATATCCACTACGGGCAGACGCGGGAGGCTGTCCGCAATCGGATGCGTTGGTGGCACGTCTTTCTCAATCTTATC AACATGAAAGCAGAAACGGGCTGTTCGTTGGACGACCTGGCGAACGAGCTATACCCGAGCGAATCGTACCCGGAGCCAGC AGAAATGACTGTCGAAACCTGGGCGGAAAGGTCGGCGCTCCGCTACGATTCATTCGCCCGCTGTGCTGGTTGGGATTGCT GCACGAAGAGCGCGAGGGGCTGA
Upstream 100 bases:
>100_bases TTGCAAGGGAAGGGAGGGGGCGGGTGAAGGGCACCCCTTCGGCTTTAGCTTTCTCGGTTTCAATTATTGCGTTCCTGGTA GATGTTGCAGGCAGCTGAAT
Downstream 100 bases:
>100_bases CCATTTGGCAGGGCGGAACCTACCACAAGACACCCTTGTGGGCTGCCTGTTTAAAGCTGGAATCAGACAGGCAATCCGAG TTTATCCTCCATTGAACTGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 220; Mature: 220
Protein sequence:
>220_residues MQGQDLAMLPEIRLMGDVDVAALSPLFRGMVMTVSYAETQGGIGLTASGAMNRKFVHWAAVHFDWPGHTSDDLYSVSKVL NEADMPPLLVVRDMLKHLRLLRRRKDVLVPTQRGRDFLVRPQAFFDLIATDYLYAYIHYGQTREAVRNRMRWWHVFLNLI NMKAETGCSLDDLANELYPSESYPEPAEMTVETWAERSALRYDSFARCAGWDCCTKSARG
Sequences:
>Translated_220_residues MQGQDLAMLPEIRLMGDVDVAALSPLFRGMVMTVSYAETQGGIGLTASGAMNRKFVHWAAVHFDWPGHTSDDLYSVSKVL NEADMPPLLVVRDMLKHLRLLRRRKDVLVPTQRGRDFLVRPQAFFDLIATDYLYAYIHYGQTREAVRNRMRWWHVFLNLI NMKAETGCSLDDLANELYPSESYPEPAEMTVETWAERSALRYDSFARCAGWDCCTKSARG >Mature_220_residues MQGQDLAMLPEIRLMGDVDVAALSPLFRGMVMTVSYAETQGGIGLTASGAMNRKFVHWAAVHFDWPGHTSDDLYSVSKVL NEADMPPLLVVRDMLKHLRLLRRRKDVLVPTQRGRDFLVRPQAFFDLIATDYLYAYIHYGQTREAVRNRMRWWHVFLNLI NMKAETGCSLDDLANELYPSESYPEPAEMTVETWAERSALRYDSFARCAGWDCCTKSARG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y4JL_RHISN (P55512)
Other databases:
- EMBL: U00090 - PIR: T28639 - RefSeq: NP_443922.1 - GeneID: 962555 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a03030 - HOGENOM: HBG653712 - ProtClustDB: CLSK861914
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25142; Mature: 25142
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 5.0 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQGQDLAMLPEIRLMGDVDVAALSPLFRGMVMTVSYAETQGGIGLTASGAMNRKFVHWAA CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHEEEEHHCCCCCCEEECCCCCCEEEEEEE VHFDWPGHTSDDLYSVSKVLNEADMPPLLVVRDMLKHLRLLRRRKDVLVPTQRGRDFLVR EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC PQAFFDLIATDYLYAYIHYGQTREAVRNRMRWWHVFLNLINMKAETGCSLDDLANELYPS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC ESYPEPAEMTVETWAERSALRYDSFARCAGWDCCTKSARG CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC >Mature Secondary Structure MQGQDLAMLPEIRLMGDVDVAALSPLFRGMVMTVSYAETQGGIGLTASGAMNRKFVHWAA CCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHEEEEHHCCCCCCEEECCCCCCEEEEEEE VHFDWPGHTSDDLYSVSKVLNEADMPPLLVVRDMLKHLRLLRRRKDVLVPTQRGRDFLVR EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEC PQAFFDLIATDYLYAYIHYGQTREAVRNRMRWWHVFLNLINMKAETGCSLDDLANELYPS HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC ESYPEPAEMTVETWAERSALRYDSFARCAGWDCCTKSARG CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424