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Identifier: 16519773

GI number: 16519773

Start: 425422

End: 426006

Strand: Reverse

Name: Not Available

Synonym: NGR_a03330

Alternate gene names: NA

Gene position: 426006-425422 (Counterclockwise)

Preceding gene: 16519772

Following gene: 16519781

Centisome position: 79.45

GC content: 60.85

Gene sequence:

>585_bases
ATGGTGGCTTCCGTCGTCCGCCTGAAGGTCACCCTCGATCATGTCGAGCCGATAGTGATGCGGCGCGTTGTCGTGCCGTT
CACCATCAGGCTCAGTCGGCTGCACGAGGTGTTGCAGGCGGCGATGGGCTGGACCAACAGCCACCTTTACGAATTCCGCA
TGCGTGACGTCGGCTTTGGTTTGCCTGACGAGGAATGGGGGGATGGTCCGATCGATGCCCGCAGGGTCTCGCTGCTGTCG
GCAGTCCAGGACACCGGTGCGAAATCGTTCAAATACCTTTACGACTTTGGCGACGGCTGGGAACACAGCATCAAGATCGA
GCGCACCTTTCCTGCGGTCGGCACGGAAGGACCGATGCTTCTCGAAGCAACGGGGCACTGCCCGCCCGAAGACGTTGGTG
GTCCATGGGGTTATCAGGAGTTCTGCGAGGCGCTTGCAGACCCGGCGCACGAGCGACATGCCGAAACCCTCGAATGGTGC
GGCAGCAGCGATTATGATTCCGCCGCCGCCAACTTCTCGCAGCTCAACAAAGCCGTCGATGACCTCGCTGCAAAATGGGC
CCGAAAAGCGCGCCGCAAAACCTGA

Upstream 100 bases:

>100_bases
TGGCTCGCATCGCCGACCATCCTGTCACGCGCCTGTACGAACTGCTGCCCTGGGAGTGGAAACGTGCATCGGCGGCAACC
GTCATGCTGGCGGCCTGACG

Downstream 100 bases:

>100_bases
ACGCCGGGCTGTGGCCGAAGGCCGAAAGTTGATTTTACCGTGTAAACAACCGGCGGAACAGTTCTTCCGAGCGCCGTAGA
CCTTCGTCCGTCAGCACCAG

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MVASVVRLKVTLDHVEPIVMRRVVVPFTIRLSRLHEVLQAAMGWTNSHLYEFRMRDVGFGLPDEEWGDGPIDARRVSLLS
AVQDTGAKSFKYLYDFGDGWEHSIKIERTFPAVGTEGPMLLEATGHCPPEDVGGPWGYQEFCEALADPAHERHAETLEWC
GSSDYDSAAANFSQLNKAVDDLAAKWARKARRKT

Sequences:

>Translated_194_residues
MVASVVRLKVTLDHVEPIVMRRVVVPFTIRLSRLHEVLQAAMGWTNSHLYEFRMRDVGFGLPDEEWGDGPIDARRVSLLS
AVQDTGAKSFKYLYDFGDGWEHSIKIERTFPAVGTEGPMLLEATGHCPPEDVGGPWGYQEFCEALADPAHERHAETLEWC
GSSDYDSAAANFSQLNKAVDDLAAKWARKARRKT
>Mature_194_residues
MVASVVRLKVTLDHVEPIVMRRVVVPFTIRLSRLHEVLQAAMGWTNSHLYEFRMRDVGFGLPDEEWGDGPIDARRVSLLS
AVQDTGAKSFKYLYDFGDGWEHSIKIERTFPAVGTEGPMLLEATGHCPPEDVGGPWGYQEFCEALADPAHERHAETLEWC
GSSDYDSAAANFSQLNKAVDDLAAKWARKARRKT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.rhizogenes plasmid pRia4B ORF-3 in virA region

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4HQ_RHISN (P50361)

Other databases:

- EMBL:   U00090
- EMBL:   X74068
- PIR:   T10851
- RefSeq:   NP_443893.1
- ProteinModelPortal:   P50361
- SMR:   P50361
- GeneID:   962328
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03330
- HOGENOM:   HBG751790
- ProtClustDB:   CLSK2301970
- InterPro:   IPR012912

Pfam domain/function: PF07929 PRiA4_ORF3

EC number: NA

Molecular weight: Translated: 21748; Mature: 21748

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVASVVRLKVTLDHVEPIVMRRVVVPFTIRLSRLHEVLQAAMGWTNSHLYEFRMRDVGFG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
LPDEEWGDGPIDARRVSLLSAVQDTGAKSFKYLYDFGDGWEHSIKIERTFPAVGTEGPML
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEE
LEATGHCPPEDVGGPWGYQEFCEALADPAHERHAETLEWCGSSDYDSAAANFSQLNKAVD
EEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DLAAKWARKARRKT
HHHHHHHHHHHCCC
>Mature Secondary Structure
MVASVVRLKVTLDHVEPIVMRRVVVPFTIRLSRLHEVLQAAMGWTNSHLYEFRMRDVGFG
CCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
LPDEEWGDGPIDARRVSLLSAVQDTGAKSFKYLYDFGDGWEHSIKIERTFPAVGTEGPML
CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCEE
LEATGHCPPEDVGGPWGYQEFCEALADPAHERHAETLEWCGSSDYDSAAANFSQLNKAVD
EEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
DLAAKWARKARRKT
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424