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The map label for this gene is traC

Identifier: 16519709

GI number: 16519709

Start: 512470

End: 512778

Strand: Reverse

Name: traC

Synonym: NGR_a03970

Alternate gene names: 16519709

Gene position: 512778-512470 (Counterclockwise)

Preceding gene: 16519703

Following gene: 16519710

Centisome position: 95.64

GC content: 62.78

Gene sequence:

>309_bases
ATGAAGAAACCTGCCTCGAAAATTCGCGACGAAATCGCCAAGCTTCAGGAACAGCTCAGACAAGCGGAAACCCGCGAAGC
CGAGCGAATTGGCCGGATTGCGCTGAAGGCAGGACTTGGCGGAATCGAGGTGGAGGAAGCCGAGCTTCAGGCAGCCTTCG
AAAGCCTGGCAAAACGCTTTCGCGGAGGCCAAGGGGGAGCGAACGGGGCTTCGAGCGGAGGGAAAAAGCCAGATGGGAAT
GCCACGGCCGGCGCATCGGCCGCGGCGGTCGGGTCTGGCGCGGCTCAGGGCGGCAATGGCGAGGCTTGA

Upstream 100 bases:

>100_bases
CGCCCTTGGCGATTGTAGGATTCACAGTAGTGCGTTCCGCACTCCGCTCCGAAAAACTGGCTTCGAAAGACAAGCTTTCT
CAGCCACGGAGACGGACGGA

Downstream 100 bases:

>100_bases
GCGGATGGCGAGGTCAGCGACATCCGACGCCCGCAAAAAGGACACGCGGGAGAAGATCGAACTCGGCGGCCTGATCGTGA
AGGCGGGCTTGCGATACGAG

Product: conjugal transfer protein TraC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MKKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRFRGGQGGANGASSGGKKPDGN
ATAGASAAAVGSGAAQGGNGEA

Sequences:

>Translated_102_residues
MKKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRFRGGQGGANGASSGGKKPDGN
ATAGASAAAVGSGAAQGGNGEA
>Mature_102_residues
MKKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRFRGGQGGANGASSGGKKPDGN
ATAGASAAAVGSGAAQGGNGEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid traC

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAC_RHISN (P55419)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443829.1
- GeneID:   962616
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03970
- HOGENOM:   HBG550151
- ProtClustDB:   PRK13848
- GO:   GO:0000746
- InterPro:   IPR012930

Pfam domain/function: PF07820 TraC

EC number: NA

Molecular weight: Translated: 10205; Mature: 10205

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RGGQGGANGASSGGKKPDGNATAGASAAAVGSGAAQGGNGEA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKKPASKIRDEIAKLQEQLRQAETREAERIGRIALKAGLGGIEVEEAELQAAFESLAKRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RGGQGGANGASSGGKKPDGNATAGASAAAVGSGAAQGGNGEA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424