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The map label for this gene is traD

Identifier: 16519710

GI number: 16519710

Start: 512250

End: 512465

Strand: Reverse

Name: traD

Synonym: NGR_a03960

Alternate gene names: 16519710

Gene position: 512465-512250 (Counterclockwise)

Preceding gene: 16519709

Following gene: 16519711

Centisome position: 95.58

GC content: 63.89

Gene sequence:

>216_bases
ATGGCGAGGTCAGCGACATCCGACGCCCGCAAAAAGGACACGCGGGAGAAGATCGAACTCGGCGGCCTGATCGTGAAGGC
GGGCTTGCGATACGAGAAGCGAGTGCTCCTGCTCGGGGCGCTGGTCGACCTCAGCCGCCGTCTCAATTCCGACGAAAGCG
AGCGCGCCCGGTTGATCGCGATCGGTGCGGAGGCATTCGGCGATGACGGTGAATAG

Upstream 100 bases:

>100_bases
AGCGGAGGGAAAAAGCCAGATGGGAATGCCACGGCCGGCGCATCGGCCGCGGCGGTCGGGTCTGGCGCGGCTCAGGGCGG
CAATGGCGAGGCTTGAGCGG

Downstream 100 bases:

>100_bases
GATCGCACTCGTCGTCGCCCCTGTCGTGCTGATGGTTTTGACCGTCATCGGCATGAGCGGGATCGAGCAATGCCTGTCGA
CCTTCGGCAAGACTGACGCT

Product: conjugal transfer protein TraD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 70

Protein sequence:

>71_residues
MARSATSDARKKDTREKIELGGLIVKAGLRYEKRVLLLGALVDLSRRLNSDESERARLIAIGAEAFGDDGE

Sequences:

>Translated_71_residues
MARSATSDARKKDTREKIELGGLIVKAGLRYEKRVLLLGALVDLSRRLNSDESERARLIAIGAEAFGDDGE
>Mature_70_residues
ARSATSDARKKDTREKIELGGLIVKAGLRYEKRVLLLGALVDLSRRLNSDESERARLIAIGAEAFGDDGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAD_RHISN (P55420)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443830.1
- GeneID:   962307
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a03960
- HOGENOM:   HBG691951
- ProtClustDB:   PRK13847
- GO:   GO:0000746
- InterPro:   IPR009444

Pfam domain/function: PF06412 TraD

EC number: NA

Molecular weight: Translated: 7773; Mature: 7642

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARSATSDARKKDTREKIELGGLIVKAGLRYEKRVLLLGALVDLSRRLNSDESERARLIA
CCCCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
IGAEAFGDDGE
ECCCCCCCCCC
>Mature Secondary Structure 
ARSATSDARKKDTREKIELGGLIVKAGLRYEKRVLLLGALVDLSRRLNSDESERARLIA
CCCCCCCHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
IGAEAFGDDGE
ECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424