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The map label for this gene is traR

Identifier: 16519697

GI number: 16519697

Start: 524291

End: 525001

Strand: Reverse

Name: traR

Synonym: NGR_a04090

Alternate gene names: 16519697

Gene position: 525001-524291 (Counterclockwise)

Preceding gene: 16519696

Following gene: 16519699

Centisome position: 97.92

GC content: 55.56

Gene sequence:

>711_bases
ATGTCCGTGAACGGAAACCTTCGCTCGCTCATCGATATGCTGGAAGCCGCGCAAGATGGGCACATGATCAAGATTGCTCT
TAGAAGCTTCGCGCATTCCTGCGGGTATGACAGGTTCGCCTACCTGCAAAAAGACGGCACCCAGGTTAGGACGTTCCATT
CCTATCCCGGACCATGGGAAAGCATCTACCTCGGTAGCGACTATTTCAACATCGATCCCGTGCTGGCGGAAGCAAAGCGC
CGGCGGGACGTTTTTTTCTGGACCGCCGACGCTTGGCCTGCCCGAGGATCGTCTCCTCTTCGGCGGTTTCGTGACGAGGC
AATCAGCCACGGCATTCGCTGCGGCGTCACCATTCCCGTGGAGGGAAGCTACGGATCCGCGATGATGCTGACCTTCGCAT
CGCCGGAAAGGAAAGTGGACATTTCGGGCGTGCTCGATCCCAAAAAGGCAGTTCAATTGCTGATGATGGTGCACTACCAA
TTGAAGATCATTGCGGCGAAAACGGTGCTTAATCCCAAGCAAATGCTGTCGCCGCGCGAGATGCTTTGCCTGGTGTGGGC
TTCGAAGGGAAAAACTGCGTCCGTAACCGCCAACCTCACTGGAATCAATGCCAGAACCGTGCAGCACTATCTCGATAAAG
CACGTGCAAAGCTTGACGCGGAATCAGTGCCGCAACTTGTTGCAATTGCCAAGGATCGCGGCCTGGTCTGA

Upstream 100 bases:

>100_bases
CAAAAAGTAATTGTGTGCGTAAATCGCAGTCATGACCCGATTGCCCAAACGGCCGCTCGTTTCGCAAAGGACGAGCTCGG
CGGTCAAGAAGATAGGAGAG

Downstream 100 bases:

>100_bases
GTTCTAGTTGTCATCGTCGAAAGGCACGTCGGGCACAAAGCCAAGCGCGTCCAGAATGTCCGATAGCTCCTCCTGTTGGG
CCTCCGACCTCTTCTGGCGT

Product: LuxR-type activtator protein TraR for conjugal transfer of pNGR234a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSVNGNLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKR
RRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQ
LKIIAAKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV

Sequences:

>Translated_236_residues
MSVNGNLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKR
RRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQ
LKIIAAKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV
>Mature_235_residues
SVNGNLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKRR
RDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQL
KIIAAKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV

Specific function: Positive regulation of conjugal transfer. TraR activates target genes in the presence of AAI and also activates traR and traI themselves

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRAR_RHISN (P55407)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443817.1
- PDB:   2Q0O
- PDBsum:   2Q0O
- ProteinModelPortal:   P55407
- SMR:   P55407
- DIP:   DIP-46219N
- GeneID:   962574
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04090
- HOGENOM:   HBG300402
- ProtClustDB:   CLSK861938
- GO:   GO:0005622
- GO:   GO:0000746
- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.30.450.80
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00421

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE; SSF46894 Bipartite_resp_reg_C-effector; SSF75516 TF_LuxR_autoind-bd_dom

EC number: NA

Molecular weight: Translated: 26288; Mature: 26157

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNGNLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWE
CCCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCC
SIYLGSDYFNIDPVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPV
EEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEECEEEEE
EGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQMLSPRE
CCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHEEEHHHHCCHHHHCCHHH
MLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV
EEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SVNGNLRSLIDMLEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGTQVRTFHSYPGPWE
CCCCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCC
SIYLGSDYFNIDPVLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPV
EEEECCCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEECEEEEE
EGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIAAKTVLNPKQMLSPRE
CCCCCCEEEEEECCCCCEEEECCCCCHHHHHHHHHHHHHHHHEEEHHHHCCHHHHCCHHH
MLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV
EEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424