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The map label for this gene is trbEb

Identifier: 16519689

GI number: 16519689

Start: 530715

End: 532703

Strand: Reverse

Name: trbEb

Synonym: NGR_a04170

Alternate gene names: 16519689

Gene position: 532703-530715 (Counterclockwise)

Preceding gene: 16519688

Following gene: 16519690

Centisome position: 99.35

GC content: 59.48

Gene sequence:

>1989_bases
GTGCTCTTCATCTTCAAGAACGCCATCCGCGAGATCGAGCAGTATTTCGCCAACACCCTTTCGATCCGGCGCATGGAAAC
GCGCGAGGCCGCCGAGAGGGGAGGGGAGCGTGTCGCCCGCTATGATGAACTGCTGCAATTTATCCGATTCTGCATCACCG
GCGAAAACCATCCGATCCGATTGCCAGCTGCTCCCATGTATCTTGACTGGATCGCGACCGCCGAACTCGAGCATGGTCTG
ACGCCGAAGGTCGAGAACCGGTTCCTCGGTGTCGTGGCGATCGACGGGCTCCCCGCCGAGAGCTGGCCGGGCATCCTCAA
CAGCCTCGACCTTATGCCTTTGACGTATCGCTGGTCGTCGCGCTTCATCTTCCTTGATGCGGAAGAGGCGCGTCAGAAGC
TCGAACGCACGCGCAAGAAGTGGCAGCAGAAGGTCCGGCCGTTCTTCGACCAGCTATTTCAGACGCAAAGCCGGTCGGTC
GACCGGGACGCCATGACAATGGTGGCCGAAACCGAGGATGCCATCGCGCAAGCGTCTTCGCAGCTTGTCGCCTATGGCTA
TTACACACCCGTGATCATTCTCTTCGACAGTGATCGCGAAGCGCTGCAGGAAAAAGCCGAGGCTATCCGCCGGCTGATCC
AGGCCGAAGGATTTGGGGCGAGGATCGAAACACTCAACGCGACCGAGGCCTATCTCGGGAGCTTGCCCGGCAACTGGTAT
TGCAATATCCGCGAACCGCTGATCAACACCAGCAATCTCGCCGATCTCATTCCCCTGAACTCCGTGTGGTCGGGAAGCCC
GGTCGCACCTTGCCCTTTCTATCCTCCCAATTCTCCGTCGCTGATGCAGGTTGCAAGCGGTTCGACACCGTTCCGGCTGA
ACCTGCATGTCGACGACGTCGGCCACACACTGATCTTTGGTCCGACGGGATCCGGCAAATCCACGCTGCTGGCGCTGATC
GCGGCACAGTTCCGACGCTATGATCGTTCCCAGATCTTCGCCTTTGACAAAGGAAGCGCGCTCCTACCGCTAACGCTGGC
TGCCGGGGGCGATCATTACGAGATCGGCGGCGACAATGCGGAAGGGCGTAAGGCACTGGCCTTTTGTCCGCTGTCGGATC
TCGAAAGTGACGCCGATCGGGCTTGGGCCGCGGAGTGGATCGAGATGCTGGTCGCTCTGCAGGGTGTCACTATCACGCCC
GATCATCGCAATGCCATGTCCCGCCAGGTCACCCTAATGGCCAGCGCTCCCGGACGATCGCTCTCCGATTTCGTGAGCGG
CGTGCAGATGCGCGAGATCAAGGACGCCCTGCATCACTATACAGTCGACGGGCCCATGGGTCAGCTTCTCGACGCCGAGC
ACGACGGACTATCGCTCGGCGCCTTTCAGACCTTCGAGATCGAGCAACTCATGAACATGGGCGAGCGCAATCTCGTCCCC
GTGCTCACCTATCTGTTCCGTCGCATTGAGAAACTGCTCGACGGCTCGCCGAGTGTGATCGTGCTGGACGAGGCTTGGTT
GATGCTCGGCCACCCAGTATTCAGAGCCAAGATCCGCGAATGGCTGAAGGTGCTACGGAAAGCCAATTGCGCCGTCGTCC
TCGCGACACAATCAATCTCCGACGCGGAGCGTTCCGGCATCATCGACGTGCTGAAGGAATCCTGCCCGACGAAGATCTGC
CTTCCGAATGGAGCCGCTCGCGAACCCGGGACGCGCGAGTTCTACGAACGGATCGGCTTCAACGAGCGGCAGATCGAGAT
CATTTCGAACGCCACTCCGAAGCGCGAATACTATGTCGTCACCCCTGAAGGCCGGCGGCTTTTTGATATGGCGCTCGGTC
CGGTGGCGCTTAGTTTCGTTGGCGCATCCGGCAAGGAAGATTTGAATCGCATCCGAACACTTCATTCCGAATACGACCGC
GACTGGCCGGTCCACTGGCTTCAGATGAGAGGATTTCACGATGCCGCGTCGCTGTTCAATGTCGAATAA

Upstream 100 bases:

>100_bases
CTGATCCTGACCTATCGGCCGTCGGAGGCCAAAAAGACAGCCGCTCAGCAAATACATCTACTCGGACGGGGAGAGCCGTA
GGAAGACCTATGCGGACACT

Downstream 100 bases:

>100_bases
TTTGCTCGCCGGTCTGGCGGTCGTCGCCGTAACGGTCGGCACAGGGGAGCCGGCCGATGCCGGCACCGCCACTGGCGTCG
CAACCGAGTGGACGCAGGTT

Product: conjugal transfer protein TrbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 662; Mature: 662

Protein sequence:

>662_residues
MLFIFKNAIREIEQYFANTLSIRRMETREAAERGGERVARYDELLQFIRFCITGENHPIRLPAAPMYLDWIATAELEHGL
TPKVENRFLGVVAIDGLPAESWPGILNSLDLMPLTYRWSSRFIFLDAEEARQKLERTRKKWQQKVRPFFDQLFQTQSRSV
DRDAMTMVAETEDAIAQASSQLVAYGYYTPVIILFDSDREALQEKAEAIRRLIQAEGFGARIETLNATEAYLGSLPGNWY
CNIREPLINTSNLADLIPLNSVWSGSPVAPCPFYPPNSPSLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKSTLLALI
AAQFRRYDRSQIFAFDKGSALLPLTLAAGGDHYEIGGDNAEGRKALAFCPLSDLESDADRAWAAEWIEMLVALQGVTITP
DHRNAMSRQVTLMASAPGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEHDGLSLGAFQTFEIEQLMNMGERNLVP
VLTYLFRRIEKLLDGSPSVIVLDEAWLMLGHPVFRAKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKIC
LPNGAAREPGTREFYERIGFNERQIEIISNATPKREYYVVTPEGRRLFDMALGPVALSFVGASGKEDLNRIRTLHSEYDR
DWPVHWLQMRGFHDAASLFNVE

Sequences:

>Translated_662_residues
MLFIFKNAIREIEQYFANTLSIRRMETREAAERGGERVARYDELLQFIRFCITGENHPIRLPAAPMYLDWIATAELEHGL
TPKVENRFLGVVAIDGLPAESWPGILNSLDLMPLTYRWSSRFIFLDAEEARQKLERTRKKWQQKVRPFFDQLFQTQSRSV
DRDAMTMVAETEDAIAQASSQLVAYGYYTPVIILFDSDREALQEKAEAIRRLIQAEGFGARIETLNATEAYLGSLPGNWY
CNIREPLINTSNLADLIPLNSVWSGSPVAPCPFYPPNSPSLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKSTLLALI
AAQFRRYDRSQIFAFDKGSALLPLTLAAGGDHYEIGGDNAEGRKALAFCPLSDLESDADRAWAAEWIEMLVALQGVTITP
DHRNAMSRQVTLMASAPGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEHDGLSLGAFQTFEIEQLMNMGERNLVP
VLTYLFRRIEKLLDGSPSVIVLDEAWLMLGHPVFRAKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKIC
LPNGAAREPGTREFYERIGFNERQIEIISNATPKREYYVVTPEGRRLFDMALGPVALSFVGASGKEDLNRIRTLHSEYDR
DWPVHWLQMRGFHDAASLFNVE
>Mature_662_residues
MLFIFKNAIREIEQYFANTLSIRRMETREAAERGGERVARYDELLQFIRFCITGENHPIRLPAAPMYLDWIATAELEHGL
TPKVENRFLGVVAIDGLPAESWPGILNSLDLMPLTYRWSSRFIFLDAEEARQKLERTRKKWQQKVRPFFDQLFQTQSRSV
DRDAMTMVAETEDAIAQASSQLVAYGYYTPVIILFDSDREALQEKAEAIRRLIQAEGFGARIETLNATEAYLGSLPGNWY
CNIREPLINTSNLADLIPLNSVWSGSPVAPCPFYPPNSPSLMQVASGSTPFRLNLHVDDVGHTLIFGPTGSGKSTLLALI
AAQFRRYDRSQIFAFDKGSALLPLTLAAGGDHYEIGGDNAEGRKALAFCPLSDLESDADRAWAAEWIEMLVALQGVTITP
DHRNAMSRQVTLMASAPGRSLSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEHDGLSLGAFQTFEIEQLMNMGERNLVP
VLTYLFRRIEKLLDGSPSVIVLDEAWLMLGHPVFRAKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKIC
LPNGAAREPGTREFYERIGFNERQIEIISNATPKREYYVVTPEGRRLFDMALGPVALSFVGASGKEDLNRIRTLHSEYDR
DWPVHWLQMRGFHDAASLFNVE

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBE2_RHISN (P55399)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443809.1
- ProteinModelPortal:   P55399
- GeneID:   962572
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04170
- HOGENOM:   HBG295291
- GO:   GO:0000746
- InterPro:   IPR003593
- InterPro:   IPR018145
- SMART:   SM00382

Pfam domain/function: PF03135 CagE_TrbE_VirB

EC number: NA

Molecular weight: Translated: 74395; Mature: 74395

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFIFKNAIREIEQYFANTLSIRRMETREAAERGGERVARYDELLQFIRFCITGENHPIR
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LPAAPMYLDWIATAELEHGLTPKVENRFLGVVAIDGLPAESWPGILNSLDLMPLTYRWSS
CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECC
RFIFLDAEEARQKLERTRKKWQQKVRPFFDQLFQTQSRSVDRDAMTMVAETEDAIAQASS
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
QLVAYGYYTPVIILFDSDREALQEKAEAIRRLIQAEGFGARIETLNATEAYLGSLPGNWY
CEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCEE
CNIREPLINTSNLADLIPLNSVWSGSPVAPCPFYPPNSPSLMQVASGSTPFRLNLHVDDV
EEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECC
GHTLIFGPTGSGKSTLLALIAAQFRRYDRSQIFAFDKGSALLPLTLAAGGDHYEIGGDNA
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEECCCCC
EGRKALAFCPLSDLESDADRAWAAEWIEMLVALQGVTITPDHRNAMSRQVTLMASAPGRS
CCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHCCEEEEEECCCCCC
LSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEHDGLSLGAFQTFEIEQLMNMGERNLVP
HHHHHCCHHHHHHHHHHHHEECCCCHHHHHCCCCCCCEECCEEHEEHHHHHCCCCCCHHH
VLTYLFRRIEKLLDGSPSVIVLDEAWLMLGHPVFRAKIREWLKVLRKANCAVVLATQSIS
HHHHHHHHHHHHHCCCCCEEEEECHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
DAERSGIIDVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIISNATPKREYYVV
HHHHCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEE
TPEGRRLFDMALGPVALSFVGASGKEDLNRIRTLHSEYDRDWPVHWLQMRGFHDAASLFN
CCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHCC
VE
CC
>Mature Secondary Structure
MLFIFKNAIREIEQYFANTLSIRRMETREAAERGGERVARYDELLQFIRFCITGENHPIR
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LPAAPMYLDWIATAELEHGLTPKVENRFLGVVAIDGLPAESWPGILNSLDLMPLTYRWSS
CCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEEECC
RFIFLDAEEARQKLERTRKKWQQKVRPFFDQLFQTQSRSVDRDAMTMVAETEDAIAQASS
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
QLVAYGYYTPVIILFDSDREALQEKAEAIRRLIQAEGFGARIETLNATEAYLGSLPGNWY
CEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCEE
CNIREPLINTSNLADLIPLNSVWSGSPVAPCPFYPPNSPSLMQVASGSTPFRLNLHVDDV
EEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEEEECC
GHTLIFGPTGSGKSTLLALIAAQFRRYDRSQIFAFDKGSALLPLTLAAGGDHYEIGGDNA
CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEECCCCC
EGRKALAFCPLSDLESDADRAWAAEWIEMLVALQGVTITPDHRNAMSRQVTLMASAPGRS
CCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHCCEEEEEECCCCCC
LSDFVSGVQMREIKDALHHYTVDGPMGQLLDAEHDGLSLGAFQTFEIEQLMNMGERNLVP
HHHHHCCHHHHHHHHHHHHEECCCCHHHHHCCCCCCCEECCEEHEEHHHHHCCCCCCHHH
VLTYLFRRIEKLLDGSPSVIVLDEAWLMLGHPVFRAKIREWLKVLRKANCAVVLATQSIS
HHHHHHHHHHHHHCCCCCEEEEECHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
DAERSGIIDVLKESCPTKICLPNGAAREPGTREFYERIGFNERQIEIISNATPKREYYVV
HHHHCCHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEE
TPEGRRLFDMALGPVALSFVGASGKEDLNRIRTLHSEYDRDWPVHWLQMRGFHDAASLFN
CCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHCC
VE
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424