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The map label for this gene is trbEa

Identifier: 16519688

GI number: 16519688

Start: 532723

End: 533172

Strand: Reverse

Name: trbEa

Synonym: NGR_a04180

Alternate gene names: 16519688

Gene position: 533172-532723 (Counterclockwise)

Preceding gene: 16519687

Following gene: 16519689

Centisome position: 99.44

GC content: 60.44

Gene sequence:

>450_bases
ATGGTCGCGCTCAAACGGTTTCGGGCAACCGGCCCATCCTTCGCGGATCTCGTCCCCTATGCCGGCCTGGTCGACAACGG
CGTGCTTCTGTTGAAAGACGGAAGCCTGATGGCCGGCTGGTATTTTGCCGGGCCGGACTCCGACAGCGCCACAGACTTCG
AACGCAACGAACTATCGCGCCAGATCAACGCAATCCTGTCGCGGCTCGGAACCGGCTGGATGATTCAAGTCGAAGCCGCC
CGTATCCCGACGTACGATTATCCCTCGGAAGACCGCTGCCATTTCCCCGATGCTGTGACGCGCGCAATTGACGCTGAGCG
ACGGGCGCATTTCGCGCGCGAGCGAGGACATTTTGAAAGCAAGCATGCGCTGATCCTGACCTATCGGCCGTCGGAGGCCA
AAAAGACAGCCGCTCAGCAAATACATCTACTCGGACGGGGAGAGCCGTAG

Upstream 100 bases:

>100_bases
TCCGATCCGCTGATGCGGCAGGTCTATGTCCGGCACATTTCCTACAAACCCTACTACAAGGCGACCACCTCTCCGTGGCG
GCGGTATTGAGGAGGCTGAT

Downstream 100 bases:

>100_bases
GAAGACCTATGCGGACACTGTGCTCTTCATCTTCAAGAACGCCATCCGCGAGATCGAGCAGTATTTCGCCAACACCCTTT
CGATCCGGCGCATGGAAACG

Product: conjugal transfer protein TrbE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MVALKRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWYFAGPDSDSATDFERNELSRQINAILSRLGTGWMIQVEAA
RIPTYDYPSEDRCHFPDAVTRAIDAERRAHFARERGHFESKHALILTYRPSEAKKTAAQQIHLLGRGEP

Sequences:

>Translated_149_residues
MVALKRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWYFAGPDSDSATDFERNELSRQINAILSRLGTGWMIQVEAA
RIPTYDYPSEDRCHFPDAVTRAIDAERRAHFARERGHFESKHALILTYRPSEAKKTAAQQIHLLGRGEP
>Mature_149_residues
MVALKRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWYFAGPDSDSATDFERNELSRQINAILSRLGTGWMIQVEAA
RIPTYDYPSEDRCHFPDAVTRAIDAERRAHFARERGHFESKHALILTYRPSEAKKTAAQQIHLLGRGEP

Specific function: Unknown

COG id: COG3451

COG function: function code U; Type IV secretory pathway, VirB4 components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbE/virB4 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBE1_RHISN (P55398)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443808.1
- GeneID:   962609
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04180
- GO:   GO:0000746

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16632; Mature: 16632

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVALKRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWYFAGPDSDSATDFERNELSR
CCCCCCHHCCCCCHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHH
QINAILSRLGTGWMIQVEAARIPTYDYPSEDRCHFPDAVTRAIDAERRAHFARERGHFES
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
KHALILTYRPSEAKKTAAQQIHLLGRGEP
CCEEEEEECCCHHHHHHHHHHHEECCCCC
>Mature Secondary Structure
MVALKRFRATGPSFADLVPYAGLVDNGVLLLKDGSLMAGWYFAGPDSDSATDFERNELSR
CCCCCCHHCCCCCHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHH
QINAILSRLGTGWMIQVEAARIPTYDYPSEDRCHFPDAVTRAIDAERRAHFARERGHFES
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
KHALILTYRPSEAKKTAAQQIHLLGRGEP
CCEEEEEECCCHHHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424