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The map label for this gene is trbJ

Identifier: 16519690

GI number: 16519690

Start: 529940

End: 530743

Strand: Reverse

Name: trbJ

Synonym: NGR_a04160

Alternate gene names: 16519690

Gene position: 530743-529940 (Counterclockwise)

Preceding gene: 16519689

Following gene: 16519691

Centisome position: 98.99

GC content: 59.2

Gene sequence:

>804_bases
ATGCCGCGTCGCTGTTCAATGTCGAATAATTTGCTCGCCGGTCTGGCGGTCGTCGCCGTAACGGTCGGCACAGGGGAGCC
GGCCGATGCCGGCACCGCCACTGGCGTCGCAACCGAGTGGACGCAGGTTCTCAACAATGGGGAGCTGGTTGCCCTGGTGG
GGAAGTCCAATGAGCAAATTCAGAACCAGCTCACCCAGATCAGCCAGTTCGCACAACAGATCGAGACGCAGCTGAACATC
TATCAGAACCTGCTCCAGAACACGGCGACGCTTCCGTCTCATATGTGGGGGCAGGTCGAGCGTGATCTCAATCGGCTCCG
CAGCATCGTCGATCAAGGTCAGAGCATCGCCTTTTCCATGGGCAACGCCGACCACGTACTGCAGCAGCGATTCCAGAGCT
ATGCAACCCTCAAGACCAACCTGCCAAGGAATGAGACATTCTCCTCGACTTATCAAGCCTGGTCGGACACCAACCGCGAT
ACGATTGCCAGCACGCTGAATGCGGCGAGCCTCACGGCCGATCAGTTCGACAGCGAGGAAACGACAATGTCCTCGCTGCG
CTCGATGTCAGAGACCGCTGACGGGCAGATGAAGGCTCTGCAGGTGGGCCACGAAATCGCGGCCCAACAGGTCGGGCAGA
TGCAGAAGCTCCGCGGCCTTGTCTCGCAGCAGATGACCATGATGGGAACCTGGCTCCAGACGGAGCAGACCGACAAGGAC
CTGGCGCAAGCACGGCGGGAAAAATTCTTCAACGCCGACGTCAAGAGCATTCCGGAAGGTCAGAAAATGGAGCCACGCTG
GTGA

Upstream 100 bases:

>100_bases
GGCGCATCCGGCAAGGAAGATTTGAATCGCATCCGAACACTTCATTCCGAATACGACCGCGACTGGCCGGTCCACTGGCT
TCAGATGAGAGGATTTCACG

Downstream 100 bases:

>100_bases
GCCGCGCCGTTATCATTGCCTTAGTGATCCTCGTCGCTGCGGTTTCGACCACAGCGACAGCGCTGATCGTCAACTCCAGA
GCCTCCAACCCATCCGCACC

Product: conjugal transfer protein TrbJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MPRRCSMSNNLLAGLAVVAVTVGTGEPADAGTATGVATEWTQVLNNGELVALVGKSNEQIQNQLTQISQFAQQIETQLNI
YQNLLQNTATLPSHMWGQVERDLNRLRSIVDQGQSIAFSMGNADHVLQQRFQSYATLKTNLPRNETFSSTYQAWSDTNRD
TIASTLNAASLTADQFDSEETTMSSLRSMSETADGQMKALQVGHEIAAQQVGQMQKLRGLVSQQMTMMGTWLQTEQTDKD
LAQARREKFFNADVKSIPEGQKMEPRW

Sequences:

>Translated_267_residues
MPRRCSMSNNLLAGLAVVAVTVGTGEPADAGTATGVATEWTQVLNNGELVALVGKSNEQIQNQLTQISQFAQQIETQLNI
YQNLLQNTATLPSHMWGQVERDLNRLRSIVDQGQSIAFSMGNADHVLQQRFQSYATLKTNLPRNETFSSTYQAWSDTNRD
TIASTLNAASLTADQFDSEETTMSSLRSMSETADGQMKALQVGHEIAAQQVGQMQKLRGLVSQQMTMMGTWLQTEQTDKD
LAQARREKFFNADVKSIPEGQKMEPRW
>Mature_266_residues
PRRCSMSNNLLAGLAVVAVTVGTGEPADAGTATGVATEWTQVLNNGELVALVGKSNEQIQNQLTQISQFAQQIETQLNIY
QNLLQNTATLPSHMWGQVERDLNRLRSIVDQGQSIAFSMGNADHVLQQRFQSYATLKTNLPRNETFSSTYQAWSDTNRDT
IASTLNAASLTADQFDSEETTMSSLRSMSETADGQMKALQVGHEIAAQQVGQMQKLRGLVSQQMTMMGTWLQTEQTDKDL
AQARREKFFNADVKSIPEGQKMEPRW

Specific function: Unknown

COG id: COG5314

COG function: function code U; Conjugal transfer/entry exclusion protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To A.tumefaciens Ti plasmid trbJ

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRBJ_RHISN (P55400)

Other databases:

- EMBL:   U00090
- RefSeq:   NP_443810.1
- GeneID:   962571
- GenomeReviews:   U00090_GR
- KEGG:   rhi:NGR_a04160
- HOGENOM:   HBG300410
- ProtClustDB:   PRK13842
- GO:   GO:0000746
- InterPro:   IPR014147
- TIGRFAMs:   TIGR02780

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29579; Mature: 29448

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRCSMSNNLLAGLAVVAVTVGTGEPADAGTATGVATEWTQVLNNGELVALVGKSNEQI
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHH
QNQLTQISQFAQQIETQLNIYQNLLQNTATLPSHMWGQVERDLNRLRSIVDQGQSIAFSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GNADHVLQQRFQSYATLKTNLPRNETFSSTYQAWSDTNRDTIASTLNAASLTADQFDSEE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
TTMSSLRSMSETADGQMKALQVGHEIAAQQVGQMQKLRGLVSQQMTMMGTWLQTEQTDKD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LAQARREKFFNADVKSIPEGQKMEPRW
HHHHHHHHHHCCCHHHCCCCCCCCCCC
>Mature Secondary Structure 
PRRCSMSNNLLAGLAVVAVTVGTGEPADAGTATGVATEWTQVLNNGELVALVGKSNEQI
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHH
QNQLTQISQFAQQIETQLNIYQNLLQNTATLPSHMWGQVERDLNRLRSIVDQGQSIAFSM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
GNADHVLQQRFQSYATLKTNLPRNETFSSTYQAWSDTNRDTIASTLNAASLTADQFDSEE
CCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHH
TTMSSLRSMSETADGQMKALQVGHEIAAQQVGQMQKLRGLVSQQMTMMGTWLQTEQTDKD
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LAQARREKFFNADVKSIPEGQKMEPRW
HHHHHHHHHHCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424