Definition | Sinorhizobium fredii NGR234 plasmid pNGR234a, complete sequence. |
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Accession | NC_000914 |
Length | 536,165 |
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The map label for this gene is noeK
Identifier: 16519648
GI number: 16519648
Start: 46885
End: 48309
Strand: Direct
Name: noeK
Synonym: NGR_a00390
Alternate gene names: 16519648
Gene position: 46885-48309 (Clockwise)
Preceding gene: 16519656
Following gene: 16519647
Centisome position: 8.74
GC content: 58.81
Gene sequence:
>1425_bases ATGGGTCCCAAATTCGGCACAAGTGGTCTGCGCGGGTTGGCAACAGAACTCGTGGGTAGTGTGTCGGCGCTCTATGCTAC AGCCTTTTCGAGGATGCTCCTCGACAGAGGACGGGTCGCGCCAGGGGCGACCGTATTGGTCGGTCGCGACTTCCGCGATT CAAGTTCGGAAATCGCCGCTATCTGCATGGCGGCGCTCGCCCGGGCGGGAATGGTGCCGGTCGACTGCGGAGGGCTGCCG ACACCAGCGCTTGCATTGTACGGCCGAAAACTCGGTGCAGCATCACTCATGATCACAGGCTCGCATATTCCGGCCGACCG AAACGGCATTAAGTTCTATCTGCCTGACGGTGAGATCAACAAGGCCGACGAGCAGGCGATTACGGCGTTGGCGGAGCAGC TTTCAGCCGATGCAGATGCAACCAGGGTTGAGTGTGGCCGCGGCGCCGACCACTCCAGCGAAGCAACTGACTTCTATATC CAACGTTACGAAACGCTGCTTCCAAAATCGGGCCTTAAGGGGCTAAAGATCGGCTTATATCAGCACAGCAGCGTTGCCCG CGATATTTTGACCACCATCTTGGAAGGTCATGGCGCAAATGTCGTACCGGTAGGCCGATCTGAGGTCTTCATCCCTGTTG ACACGGAAGCTATTTCGGCGGCGACATGTAAGATGCTCGCTGCCTGGGCGAAGGAGTTCGCCTTTGACGCCATTGTATCG TCCGACGCAGATGCCGATCGGCCCCTGCTAACGGATGAAACGGGAACTCCATTGCGCGGTGATCTGCTCGGTCTTATTTG CGCAAGGCTGCTGGAGGCCAAGCTTATTGCTACGCCAATAACCAGCAACTCCGGGATCGAGGCGGCGAGTGGCGTCGAGG TGGTGCGTACCCGCGTTGGCTCACCTTACGTCATTGCAGCCATGACTGAGGCGGTTGCCCGTGGCAAGCAGCGGGTGATG GGCTTCGAGGCCAACGGTGGCGTCATGCTAGGTTCGAACTTCTCGTTCGGAGGCGCGTCGCTTCCCGCCTTGCCGACCCG GGACTGCGTCCTTCCCATCATTGCAGCGCTCCACATGGCAGTAGAGGCCAAAACTCCCCTCTCGGGGATCGTCGCGATGC ATCGTTTGCCAGTCGCTTTGTCCGGCCGGATCGAGAACTATCCGTTCGATAGGAGCGACGCCCTAGTGGCATTCTTGAAA GCGTCAAAAGCTAATGTTTCCCATTTATTCAGCCGGATCGGTCGCGTGGCGGGCACGGACGACGTGGATGGCCTGCGCCT GACATTTGAAGGCGGCCGTATCCTGCACATCCGCCCTTCAGGAAATGCGCCTGAACTGCGTTGCTACGTCGAGGCAGACG ACCCAGATGCTGCCGAACATTTGCTGGCTCAGGGACTGGCGGTCCTTAACAGTTCAATGGTGTAA
Upstream 100 bases:
>100_bases CGAGAGCGAAGCAATCTCATTAGTGGATGCGAATTCATTCGGCTTGCCCCGGTGGCGTCGACTACCTGCTGAACGCTGCC CGGCAAAAAAAGGCTAGTTA
Downstream 100 bases:
>100_bases GTTAGGCTTTGCTGATATGCAGATCTGTTACCGCTAGCGTCGATGGTTCGCCACCTAACGTGAAGATAAGCCCTGAAAGA CACGTCCCCTTTACATCCAA
Product: phosphomanomutase
Products: NA
Alternate protein names: PMM
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MGPKFGTSGLRGLATELVGSVSALYATAFSRMLLDRGRVAPGATVLVGRDFRDSSSEIAAICMAALARAGMVPVDCGGLP TPALALYGRKLGAASLMITGSHIPADRNGIKFYLPDGEINKADEQAITALAEQLSADADATRVECGRGADHSSEATDFYI QRYETLLPKSGLKGLKIGLYQHSSVARDILTTILEGHGANVVPVGRSEVFIPVDTEAISAATCKMLAAWAKEFAFDAIVS SDADADRPLLTDETGTPLRGDLLGLICARLLEAKLIATPITSNSGIEAASGVEVVRTRVGSPYVIAAMTEAVARGKQRVM GFEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMAVEAKTPLSGIVAMHRLPVALSGRIENYPFDRSDALVAFLK ASKANVSHLFSRIGRVAGTDDVDGLRLTFEGGRILHIRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNSSMV
Sequences:
>Translated_474_residues MGPKFGTSGLRGLATELVGSVSALYATAFSRMLLDRGRVAPGATVLVGRDFRDSSSEIAAICMAALARAGMVPVDCGGLP TPALALYGRKLGAASLMITGSHIPADRNGIKFYLPDGEINKADEQAITALAEQLSADADATRVECGRGADHSSEATDFYI QRYETLLPKSGLKGLKIGLYQHSSVARDILTTILEGHGANVVPVGRSEVFIPVDTEAISAATCKMLAAWAKEFAFDAIVS SDADADRPLLTDETGTPLRGDLLGLICARLLEAKLIATPITSNSGIEAASGVEVVRTRVGSPYVIAAMTEAVARGKQRVM GFEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMAVEAKTPLSGIVAMHRLPVALSGRIENYPFDRSDALVAFLK ASKANVSHLFSRIGRVAGTDDVDGLRLTFEGGRILHIRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNSSMV >Mature_473_residues GPKFGTSGLRGLATELVGSVSALYATAFSRMLLDRGRVAPGATVLVGRDFRDSSSEIAAICMAALARAGMVPVDCGGLPT PALALYGRKLGAASLMITGSHIPADRNGIKFYLPDGEINKADEQAITALAEQLSADADATRVECGRGADHSSEATDFYIQ RYETLLPKSGLKGLKIGLYQHSSVARDILTTILEGHGANVVPVGRSEVFIPVDTEAISAATCKMLAAWAKEFAFDAIVSS DADADRPLLTDETGTPLRGDLLGLICARLLEAKLIATPITSNSGIEAASGVEVVRTRVGSPYVIAAMTEAVARGKQRVMG FEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMAVEAKTPLSGIVAMHRLPVALSGRIENYPFDRSDALVAFLKA SKANVSHLFSRIGRVAGTDDVDGLRLTFEGGRILHIRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNSSMV
Specific function: Unknown
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family
Homologues:
Organism=Escherichia coli, GI1789566, Length=464, Percent_Identity=27.5862068965517, Blast_Score=83, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NOEK_RHISN (P55356)
Other databases:
- EMBL: U00090 - RefSeq: NP_443768.1 - ProteinModelPortal: P55356 - GeneID: 962306 - GenomeReviews: U00090_GR - KEGG: rhi:NGR_a00390 - HOGENOM: HBG644964 - ProtClustDB: CLSK784548 - GO: GO:0009877 - InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - Gene3D: G3DSA:3.40.120.10
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV; SSF53738 A-D-PHexomutase_a/b/a-I/II/III
EC number: =5.4.2.8
Molecular weight: Translated: 49672; Mature: 49540
Theoretical pI: Translated: 6.07; Mature: 6.07
Prosite motif: PS00710 PGM_PMM
Important sites: ACT_SITE 101-101
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPKFGTSGLRGLATELVGSVSALYATAFSRMLLDRGRVAPGATVLVGRDFRDSSSEIAA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH ICMAALARAGMVPVDCGGLPTPALALYGRKLGAASLMITGSHIPADRNGIKFYLPDGEIN HHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCC KADEQAITALAEQLSADADATRVECGRGADHSSEATDFYIQRYETLLPKSGLKGLKIGLY CHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE QHSSVARDILTTILEGHGANVVPVGRSEVFIPVDTEAISAATCKMLAAWAKEFAFDAIVS CCHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC SDADADRPLLTDETGTPLRGDLLGLICARLLEAKLIATPITSNSGIEAASGVEVVRTRVG CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCC SPYVIAAMTEAVARGKQRVMGFEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMA CCEEHHHHHHHHHCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH VEAKTPLSGIVAMHRLPVALSGRIENYPFDRSDALVAFLKASKANVSHLFSRIGRVAGTD HHCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC DVDGLRLTFEGGRILHIRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNSSMV CCCCEEEEECCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GPKFGTSGLRGLATELVGSVSALYATAFSRMLLDRGRVAPGATVLVGRDFRDSSSEIAA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHH ICMAALARAGMVPVDCGGLPTPALALYGRKLGAASLMITGSHIPADRNGIKFYLPDGEIN HHHHHHHHCCCCEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCCCCC KADEQAITALAEQLSADADATRVECGRGADHSSEATDFYIQRYETLLPKSGLKGLKIGLY CHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEE QHSSVARDILTTILEGHGANVVPVGRSEVFIPVDTEAISAATCKMLAAWAKEFAFDAIVS CCHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHC SDADADRPLLTDETGTPLRGDLLGLICARLLEAKLIATPITSNSGIEAASGVEVVRTRVG CCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHCC SPYVIAAMTEAVARGKQRVMGFEANGGVMLGSNFSFGGASLPALPTRDCVLPIIAALHMA CCEEHHHHHHHHHCCHHHEEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHH VEAKTPLSGIVAMHRLPVALSGRIENYPFDRSDALVAFLKASKANVSHLFSRIGRVAGTD HHCCCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCC DVDGLRLTFEGGRILHIRPSGNAPELRCYVEADDPDAAEHLLAQGLAVLNSSMV CCCCEEEEECCCEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424