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The map label for this gene is ymdB [C]

Identifier: 161870943

GI number: 161870943

Start: 2081778

End: 2082296

Strand: Reverse

Name: ymdB [C]

Synonym: NMCC_2037

Alternate gene names: 161870943

Gene position: 2082296-2081778 (Counterclockwise)

Preceding gene: 161870944

Following gene: 161870942

Centisome position: 96.7

GC content: 54.14

Gene sequence:

>519_bases
ATGGCTGTTTTTGACGTGGTCGAGGGCGATATTACCCGATTGGCAATCGATGCGATTGTCAATGCCGCCAATTCATCGCT
GTTGGGCGGTGGCGGCGTAGACGGTGCAATACACCGCGCCGCAGGCAAAGAGCTGCTGGAGGAGTGCCGTACTCTGGGCG
GTTGCCGCACAGGCGAAGCCAAAATAACCAAAGGCTATCGTTTGCCTGCACGTTTTGTCATCCACACGGTCGGGCCGGTA
TGGTTTGGCGGAAAACAAAATGAAGAGGCCAAATTGGCACAATCCTACGCCAATTCCTTGCTGCTTGCCCGGAAACACGA
TCTCCACAGAATCGCCTTTCCGTGCATCAGCACCGGTGTGTACCGCTTTCCGGCCGAAGCCGCCGCACGTATTGCTTTGG
AGAGTTTGAAACAAACCCTGCCGCAATGTCCGGCAGTGGAAAAAATCATCTTTTGCTGTTTTTCCAAAACAGATGCCGAA
TATTATCGGGCATTGCTGGCAGCCGAACAGGCCGTCTGA

Upstream 100 bases:

>100_bases
CGGCAAACGCATGAGCATACAGGCATTTGCGGCAGGTCGGACGATTGAAGTCGGAACGGTTTTGTAACAGGCTGGAAGTC
AACGTAGAGGAAAGAAGACA

Downstream 100 bases:

>100_bases
AATCCGCCGAACACTTGAAATCAAATATGAATCAGAAAGCAAAAATATGAGTATGTCCCTCGCCCAAAAACTGGCCGCCG
ACAGCGTTGCCGCGGTTGCC

Product: histone macro-H2A1-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MAVFDVVEGDITRLAIDAIVNAANSSLLGGGGVDGAIHRAAGKELLEECRTLGGCRTGEAKITKGYRLPARFVIHTVGPV
WFGGKQNEEAKLAQSYANSLLLARKHDLHRIAFPCISTGVYRFPAEAAARIALESLKQTLPQCPAVEKIIFCCFSKTDAE
YYRALLAAEQAV

Sequences:

>Translated_172_residues
MAVFDVVEGDITRLAIDAIVNAANSSLLGGGGVDGAIHRAAGKELLEECRTLGGCRTGEAKITKGYRLPARFVIHTVGPV
WFGGKQNEEAKLAQSYANSLLLARKHDLHRIAFPCISTGVYRFPAEAAARIALESLKQTLPQCPAVEKIIFCCFSKTDAE
YYRALLAAEQAV
>Mature_171_residues
AVFDVVEGDITRLAIDAIVNAANSSLLGGGGVDGAIHRAAGKELLEECRTLGGCRTGEAKITKGYRLPARFVIHTVGPVW
FGGKQNEEAKLAQSYANSLLLARKHDLHRIAFPCISTGVYRFPAEAAARIALESLKQTLPQCPAVEKIIFCCFSKTDAEY
YRALLAAEQAV

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=165, Percent_Identity=55.1515151515151, Blast_Score=178, Evalue=2e-45,
Organism=Homo sapiens, GI117968621, Length=162, Percent_Identity=56.1728395061728, Blast_Score=173, Evalue=6e-44,
Organism=Homo sapiens, GI207450721, Length=160, Percent_Identity=36.875, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI8923143, Length=160, Percent_Identity=36.875, Blast_Score=102, Evalue=1e-22,
Organism=Homo sapiens, GI154813199, Length=143, Percent_Identity=36.3636363636364, Blast_Score=87, Evalue=6e-18,
Organism=Homo sapiens, GI226371718, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371716, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371714, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371712, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371710, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371706, Length=153, Percent_Identity=32.0261437908497, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI20336746, Length=157, Percent_Identity=31.8471337579618, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI93141018, Length=168, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI93141020, Length=168, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI4758496, Length=168, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Escherichia coli, GI1787283, Length=168, Percent_Identity=50.5952380952381, Blast_Score=167, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17538214, Length=161, Percent_Identity=47.2049689440994, Blast_Score=140, Evalue=4e-34,
Organism=Drosophila melanogaster, GI24586353, Length=160, Percent_Identity=37.5, Blast_Score=103, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18522; Mature: 18390

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVFDVVEGDITRLAIDAIVNAANSSLLGGGGVDGAIHRAAGKELLEECRTLGGCRTGEA
CCCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KITKGYRLPARFVIHTVGPVWFGGKQNEEAKLAQSYANSLLLARKHDLHRIAFPCISTGV
CCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YRFPAEAAARIALESLKQTLPQCPAVEKIIFCCFSKTDAEYYRALLAAEQAV
HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
AVFDVVEGDITRLAIDAIVNAANSSLLGGGGVDGAIHRAAGKELLEECRTLGGCRTGEA
CCHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
KITKGYRLPARFVIHTVGPVWFGGKQNEEAKLAQSYANSLLLARKHDLHRIAFPCISTGV
CCCCCCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
YRFPAEAAARIALESLKQTLPQCPAVEKIIFCCFSKTDAEYYRALLAAEQAV
HHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]