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The map label for this gene is comF [H]

Identifier: 161870794

GI number: 161870794

Start: 1927489

End: 1928028

Strand: Direct

Name: comF [H]

Synonym: NMCC_1876

Alternate gene names: 161870794

Gene position: 1927489-1928028 (Clockwise)

Preceding gene: 161870789

Following gene: 161870795

Centisome position: 89.51

GC content: 57.22

Gene sequence:

>540_bases
GTGTGCGGCGGCTGTCAGAAAAAACCGCCCGCATTCGACCGGATGTGGGCTTCGCTGCATTACGAACCGCCCGTCAGCAA
TATGATACACGCGCTGAAGCACTTGGCTGATTTGAGCATGGTGCAGCCGCTGGCAGACCTGATGATGCAGAATCCGCCCG
ACCGGCTTGCAGACGAATGTTTCGATTTCGTCCTGCCCGTACCGCTAAGCAGGGAGCGGCTGCTGCAACGCGGGTTCAAC
CAAAGTGAAAGCATCGTCGGGCTGCTGGCTCAACGCTACGGTTGGCGCACGCTGCCCCTGCATACCGTATTCCGCCGCCA
CCGGCCGCCGCAAAGCACGCTCAAAGGCGGCGAACGGCGGCGAAATATCAAAAACGCCTTTGAAATCCGCACACCGCCGC
CGAAAAACTGTAATATTTTGTTAATCGACGATGTCTTTACCACCGGCGCGACGCTGGACGAATTGGCAAAGACGCTGAAA
AAATCGGGCGCAAACCGAATCTGCTGCTGGACGCTGGCACGCACGCCAATGAAAAAATAA

Upstream 100 bases:

>100_bases
AGACGGCATCTGCGCCGGCTGCCGCGACGATTTGGCGGCATACCGCACCGACGCGGCAAACAGCTGCCCCCTGTGTTTCA
TGCACGTTCAAGGCGGCGCG

Downstream 100 bases:

>100_bases
CTAAATTTTTTGACACCCCATCCGCCTTGTGGCAAGGTTACGCGCCTATAAGTGATTGATATTTATGTTTACCATCGTTT
TATACCAACCGGAAATCCCC

Product: competence protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFN
QSESIVGLLAQRYGWRTLPLHTVFRRHRPPQSTLKGGERRRNIKNAFEIRTPPPKNCNILLIDDVFTTGATLDELAKTLK
KSGANRICCWTLARTPMKK

Sequences:

>Translated_179_residues
MCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFN
QSESIVGLLAQRYGWRTLPLHTVFRRHRPPQSTLKGGERRRNIKNAFEIRTPPPKNCNILLIDDVFTTGATLDELAKTLK
KSGANRICCWTLARTPMKK
>Mature_179_residues
MCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLADECFDFVLPVPLSRERLLQRGFN
QSESIVGLLAQRYGWRTLPLHTVFRRHRPPQSTLKGGERRRNIKNAFEIRTPPPKNCNILLIDDVFTTGATLDELAKTLK
KSGANRICCWTLARTPMKK

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=177, Percent_Identity=31.638418079096, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 20418; Mature: 20418

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLADEC
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWRTLPLHTVFRRHRPPQSTLKGGERR
HHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHCCHHHH
RNIKNAFEIRTPPPKNCNILLIDDVFTTGATLDELAKTLKKSGANRICCWTLARTPMKK
HHHHHHHCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHCCCCEEEEEHHCCCCCCC
>Mature Secondary Structure
MCGGCQKKPPAFDRMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQNPPDRLADEC
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
FDFVLPVPLSRERLLQRGFNQSESIVGLLAQRYGWRTLPLHTVFRRHRPPQSTLKGGERR
HHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHCCHHHH
RNIKNAFEIRTPPPKNCNILLIDDVFTTGATLDELAKTLKKSGANRICCWTLARTPMKK
HHHHHHHCCCCCCCCCCCEEEECCCHHCCCCHHHHHHHHHHCCCCEEEEEHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]