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The map label for this gene is dapD [H]

Identifier: 161870735

GI number: 161870735

Start: 1853421

End: 1854242

Strand: Reverse

Name: dapD [H]

Synonym: NMCC_1808

Alternate gene names: 161870735

Gene position: 1854242-1853421 (Counterclockwise)

Preceding gene: 161870736

Following gene: 161870734

Centisome position: 86.11

GC content: 56.33

Gene sequence:

>822_bases
ATGTCTTTGCAAAACATTATCGAAACCGCCTTTGAAAACCGCGCGGACATTACCCCGACCACCGTTACTCCCGAAGTCAA
AGAAGCCGTGTTGGAAACCATCCGCCAACTCGATTCAGGCAAACTGCGCGTTGCCGAACGCTTGGGCGTGGGTGAGTGGA
AAGTCAACGAATGGGCGAAAAAAGCCGTGTTGCTGTCCTTCCGCATCCAAGACAACGAAGTCCTCAACGACGGCGTGAAC
AAATACTTCGACAAAGTGCCGACCAAGTTTGCCGACTGGTCTGAAGACGAGTTCAAAAACGCAGGCTTCCGCGCCGTTCC
GGGTGCGGTTGCCCGACGCGGCAGCTTTGTGGCGAAAAATGTCGTGCTGATGCCGTCTTACGTCAACATCGGCGCATACG
TCGACGAAGGCGCGATGGTTGATACTTGGGCGACTGTCGGCTCTTGCGCGCAAATCGGTAAAAACGTGCACTTGAGTGGC
GGCGTCGGTATCGGCGGCGTACTCGAACCCCTGCAGGCCGCCCCCACCATCATTGAAGACAACTGCTTCATCGGTGCGCG
TTCTGAAATCGTTGAGGGCGTGATTGTCGAAGAAGGCAGCGTGATTTCGATGGGCGTGTTCATCGGTCAATCCACCAAAA
TCTTCGACCGCACCACCGGCGAAATCTACCAAGGCCGCGTACCGACAGGTTCGGTCGTCGTGTCCGGCAGTATGCCTTCC
AAAGACGGCAGCCACAGCCTTTACTGCGCCGTCATCGTCAAACGCGTGGACGCGCAAACCCGTGCGAAAACCAGCGTGAA
CGAATTGTTGCGCGGCATCTGA

Upstream 100 bases:

>100_bases
TATGCGTTTGCGTGGCACAATAGCGCATTCATTTCAAATGAACATACTGCTTGAAAATACCGGCAAGCGTCCCACGAAAC
ATCTCACATAAGGAAACATT

Downstream 100 bases:

>100_bases
TGCCTTAAACCGTATTTGAAACGTCCGATGCCGTCTGAAATCCGCTTCGGACGGCATTGCCGTTTGCATGCTGCAACGTG
AAAACACAGAAACAGGGACA

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRVAERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVN
KYFDKVPTKFADWSEDEFKNAGFRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRTTGEIYQGRVPTGSVVVSGSMPS
KDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI

Sequences:

>Translated_273_residues
MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRVAERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVN
KYFDKVPTKFADWSEDEFKNAGFRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRTTGEIYQGRVPTGSVVVSGSMPS
KDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI
>Mature_272_residues
SLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRVAERLGVGEWKVNEWAKKAVLLSFRIQDNEVLNDGVNK
YFDKVPTKFADWSEDEFKNAGFRAVPGAVARRGSFVAKNVVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSGG
VGIGGVLEPLQAAPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRTTGEIYQGRVPTGSVVVSGSMPSK
DGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=73.0627306273063, Blast_Score=385, Evalue=1e-108,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29440; Mature: 29309

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRVAERLGVGEWKVNEWAK
CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHHHH
KAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAGFRAVPGAVARRGSFVAKN
HEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCHHHCC
VVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAAPTIIED
EEEECCEEECCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCEECC
NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRTTGEIYQGRVPTGSVVVSGSMPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCHHEECCCCCCCEEEECCCCC
KDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLQNIIETAFENRADITPTTVTPEVKEAVLETIRQLDSGKLRVAERLGVGEWKVNEWAK
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEHHHHCCCCCCHHHHHHH
KAVLLSFRIQDNEVLNDGVNKYFDKVPTKFADWSEDEFKNAGFRAVPGAVARRGSFVAKN
HEEEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCCCHHHCC
VVLMPSYVNIGAYVDEGAMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQAAPTIIED
EEEECCEEECCEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHCCCEECC
NCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIFDRTTGEIYQGRVPTGSVVVSGSMPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCHHEECCCCCCCEEEECCCCC
KDGSHSLYCAVIVKRVDAQTRAKTSVNELLRGI
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA