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The map label for this gene is yhcM [H]

Identifier: 161870179

GI number: 161870179

Start: 1212577

End: 1213533

Strand: Direct

Name: yhcM [H]

Synonym: NMCC_1219

Alternate gene names: 161870179

Gene position: 1212577-1213533 (Clockwise)

Preceding gene: 161870178

Following gene: 161870180

Centisome position: 56.31

GC content: 52.77

Gene sequence:

>957_bases
TTGCGTTCCCCGCAAGTCCCCAAAGGGCTTTATTTCTATGGCGGGGTCGGACGCGGCAAAAGCTTTCTGATGGACGCTTT
TTTCGGCTGCCTCCCTTACCGCCGCAAACGCCGCGTCCACTTTCATGCCTTTATGGCAGAAATCCACCAGAGGCTGAAAA
CCCTGAAAAGCGAAAGCAACCCGTTGAAATCCGTTGCCGCCGAGATTGCCAAAGAAACCCGCGTATTGTGTTTTGACGAA
TTTCATGTCAGCGATATTGCGGATGCAATGATTTTAGGCCGTCTGCTGGAAAACCTGCTTAACGAGGGCGTTGTTTTGGT
GGCGACTTCAAACTACGCGCCTTCCGAACTCTACCCGCAAGGTCAAAACCGGAGCAGTTTTCTTCCCACAATCGCGCTCA
TCGAGTCCAGCCTGACCGTCTTAAACGTTGACGGCGGTGAAGACTACCGACTGCGTACCCTCCGCCCCGCCGAGATTTTC
TTTACGCCTGCCAATGAAGAAAATGAGGCAAAACTGGCAAAACTGTTCAAAGAAATGACAGGCATTACCGATTTGAACCC
CGGCATCAGCACCATCCACGGTCGGGAGATTCCCCACAAAGCCGAGTCCGGCCGTGCCATATGGTTTGATTTCCGCGCAC
TGTGCTTCGGCCCCCGCTCACAGTCCGACTATCTGTATTTGGCCGAACATTATGAAATGGTTTTTATTTCAGGTTTGGAA
CAACTCTCACCGCAAGAAAAGGCGGAGGCGCGGCGGCTGACTTGGCTGATTGACGTACTCTACGATTTCCGGGTCAAACT
GTGTGCCACCGGCGCGGTAGATGTCAACCATATCTATACGGAAGGCGATTTTGCCGAAGAATTTACCCGCACCGCCAGCC
GGATGGTCGAAATGCAGTCCGAAGTTTATTTGGAACAGCCGCACCTGACCCTATCTCCCAAGGCTTCAGGCGGATAA

Upstream 100 bases:

>100_bases
CCGCGACGACGCGCAGGCAGCCGCCATCGAACACCTCGATCGGCTTTGGACCGAATTGATGATGTTCAAACGCAAAAGAA
ACCGTTTTTTAGGCAGGAGT

Downstream 100 bases:

>100_bases
GTTATTTTTTTGATAGAATACCGATTTGATTCTTCTTAAGTAAAAATAAGGATATAGCATGGCGATTGAACGTACCATCT
CCATCATCAAACCCGATGCC

Product: nucleotide-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDE
FHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRTLRPAEIF
FTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLE
QLSPQEKAEARRLTWLIDVLYDFRVKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG

Sequences:

>Translated_318_residues
MRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDE
FHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRTLRPAEIF
FTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLE
QLSPQEKAEARRLTWLIDVLYDFRVKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG
>Mature_318_residues
MRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESNPLKSVAAEIAKETRVLCFDE
FHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQGQNRSSFLPTIALIESSLTVLNVDGGEDYRLRTLRPAEIF
FTPANEENEAKLAKLFKEMTGITDLNPGISTIHGREIPHKAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLE
QLSPQEKAEARRLTWLIDVLYDFRVKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQSEVYLEQPHLTLSPKASGG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=344, Percent_Identity=35.1744186046512, Blast_Score=213, Evalue=2e-55,
Organism=Escherichia coli, GI1789627, Length=302, Percent_Identity=42.0529801324503, Blast_Score=246, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17505769, Length=353, Percent_Identity=32.8611898016997, Blast_Score=184, Evalue=5e-47,
Organism=Saccharomyces cerevisiae, GI6320783, Length=319, Percent_Identity=36.3636363636364, Blast_Score=178, Evalue=1e-45,
Organism=Drosophila melanogaster, GI20129913, Length=348, Percent_Identity=34.4827586206897, Blast_Score=186, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 35957; Mature: 35957

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESN
CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQ
HHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCC
GQNRSSFLPTIALIESSLTVLNVDGGEDYRLRTLRPAEIFFTPANEENEAKLAKLFKEMT
CCCCCCCCHHHHHHHCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHC
GITDLNPGISTIHGREIPHKAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHEECCCCCCCEEEEEHHHHHHEECCHH
QLSPQEKAEARRLTWLIDVLYDFRVKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQS
HCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEECEEEECCCHHHHHHHHHHHHHHHHH
EVYLEQPHLTLSPKASGG
HHEEECCCEEECCCCCCC
>Mature Secondary Structure
MRSPQVPKGLYFYGGVGRGKSFLMDAFFGCLPYRRKRRVHFHAFMAEIHQRLKTLKSESN
CCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PLKSVAAEIAKETRVLCFDEFHVSDIADAMILGRLLENLLNEGVVLVATSNYAPSELYPQ
HHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCC
GQNRSSFLPTIALIESSLTVLNVDGGEDYRLRTLRPAEIFFTPANEENEAKLAKLFKEMT
CCCCCCCCHHHHHHHCCCEEEECCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHHC
GITDLNPGISTIHGREIPHKAESGRAIWFDFRALCFGPRSQSDYLYLAEHYEMVFISGLE
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHEECCCCCCCEEEEEHHHHHHEECCHH
QLSPQEKAEARRLTWLIDVLYDFRVKLCATGAVDVNHIYTEGDFAEEFTRTASRMVEMQS
HCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCEEECEEEECCCHHHHHHHHHHHHHHHHH
EVYLEQPHLTLSPKASGG
HHEEECCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]