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The map label for this gene is rpoE [H]

Identifier: 161524571

GI number: 161524571

Start: 1541686

End: 1542327

Strand: Direct

Name: rpoE [H]

Synonym: Bmul_1398

Alternate gene names: 161524571

Gene position: 1541686-1542327 (Clockwise)

Preceding gene: 161524570

Following gene: 161524572

Centisome position: 44.71

GC content: 72.59

Gene sequence:

>642_bases
GTGGGGCAAGCCGGACAGCCGGTCGATGGGCAGACAGCAGGCGATGCGGCGGCGCGCGGCGAGCGGTTTCGCGCGCTCGT
GCTGCCGCACCTCGATGCTGCGTACAACCTCGCGCGCTGGCTGAGCGGCAGCGCGAGCGACGCGGACGACGTCGTGCAGG
AGGCGTGCATGCGTGCGCTGCGCTTCGTCGATTCGTGCCGCGGCGACAACGCGCGGCCGTGGCTGCTGACGATCGTGCGG
CACACGTGGTACAGCGAATGGCGGCGGCGCACGCATGCGCACGAAGTCGCCGCCCCCGACACGCTCGAGGACGCCGACGT
GCCCGACGACTGGCAGCCGGCGACGACCGATCCGCTCGCGCAGCTGCTGCGCGGCGAAAACGTCCGGCTCGTCAACGCGG
CGCTCGCGAAACTGCCTGCCGAGTACCGTGAGGTGCTCGTGCTGCGCGAGATGGAGGATCTCAGCTATCGCGAAATCGCG
GCGATCGCGGACGTGCCGATCGGCACCGTGATGTCGCGGCTCGCGCGCGGCCGTCGGCGGCTCGCCGCGCTGCTCGGCGA
GGAAGCCGTGCCGGCGCGCGGCGAGCGGGCGGCGCGCACGCCGGCCGGCGGATCGGCATCGGAGGCTATCGATGGACTGT
AA

Upstream 100 bases:

>100_bases
GGACTTCGGGCTGGGACTTCGGGCTCGGCCTCGGGACTTGGGCGGCCGGCATCGCACGCGCAGCGGGCGCGGCTTCGGCC
GCCGGGACCAGGGAGGCCAT

Downstream 100 bases:

>100_bases
CGAAGCGCGCGCGCTGCTGGATGCGGACGTCGACCGCGAGCTGTCGCCGCCGGATGCGCTGCGGGTCCAGCAGCACGTCG
ACGAATGCGAGCTGTGCCGG

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MGQAGQPVDGQTAGDAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRALRFVDSCRGDNARPWLLTIVR
HTWYSEWRRRTHAHEVAAPDTLEDADVPDDWQPATTDPLAQLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYREIA
AIADVPIGTVMSRLARGRRRLAALLGEEAVPARGERAARTPAGGSASEAIDGL

Sequences:

>Translated_213_residues
MGQAGQPVDGQTAGDAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRALRFVDSCRGDNARPWLLTIVR
HTWYSEWRRRTHAHEVAAPDTLEDADVPDDWQPATTDPLAQLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYREIA
AIADVPIGTVMSRLARGRRRLAALLGEEAVPARGERAARTPAGGSASEAIDGL
>Mature_212_residues
GQAGQPVDGQTAGDAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRALRFVDSCRGDNARPWLLTIVRH
TWYSEWRRRTHAHEVAAPDTLEDADVPDDWQPATTDPLAQLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYREIAA
IADVPIGTVMSRLARGRRRLAALLGEEAVPARGERAARTPAGGSASEAIDGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=140, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 23230; Mature: 23099

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQAGQPVDGQTAGDAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRAL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYSEWRRRTHAHEVAAPDTLEDADVPDDWQPATTDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
QLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYREIAAIADVPIGTVMSRLARGRRR
HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGEEAVPARGERAARTPAGGSASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
GQAGQPVDGQTAGDAAARGERFRALVLPHLDAAYNLARWLSGSASDADDVVQEACMRAL
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RFVDSCRGDNARPWLLTIVRHTWYSEWRRRTHAHEVAAPDTLEDADVPDDWQPATTDPLA
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH
QLLRGENVRLVNAALAKLPAEYREVLVLREMEDLSYREIAAIADVPIGTVMSRLARGRRR
HHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHH
LAALLGEEAVPARGERAARTPAGGSASEAIDGL
HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]