| Definition | Burkholderia multivorans ATCC 17616 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010084 |
| Length | 3,448,466 |
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The map label for this gene is icd [H]
Identifier: 161523951
GI number: 161523951
Start: 844381
End: 846606
Strand: Direct
Name: icd [H]
Synonym: Bmul_0771
Alternate gene names: 161523951
Gene position: 844381-846606 (Clockwise)
Preceding gene: 161523950
Following gene: 161523953
Centisome position: 24.49
GC content: 66.08
Gene sequence:
>2226_bases ATGTCCACTTCGCCCAAGATCATCTACACGCTCACCGACGAAGCGCCCGCGCTCGCGACCTATTCGCTGCTGCCGATCGT CAAGGCCTTCACGCGTTCGTCCGGCGTCGCCGTCGAAACGCGCGACATTTCGCTCGCGGGCCGCATCATCGCGGCATTTG CAGACACCCTGCCGCCCGAGCAGAAGGGTTCCGACGATCTGGCCGAGCTCGGCCAGCTCACGCTGAAGCCCGAGGCGAAC ATCATCAAGCTGCCGAACATCAGCGCATCGGTGCCGCAGCTGAAGGCTGCGATCGCCGAGCTGCAGGCACAGGGCTACAA GCTGCCGGCCTATCCGGAAGAGCCGTCGACCGACGAAGAGAAGGCGATCAAGGCCCGTTACGACAAGATCAAGGGCAGCG CCGTGAACCCGGTGCTGCGCGAAGGCAACTCCGACCGCCGCGCGCCGCTGTCGGTGAAGAACTACGCACGCAAGCACCCG CACAAGATGGGCGCATGGCAGTCGAGCTCGAAGGCGCACGTCGCGCACATGACGGAAGGCGACTTCTACGGCAGCGAGAA GTCGGCGCTGATCGCCGAGCCGGGCAGCGTGAAGATCGAGCTGACCACGGCCGACGGCGTGAAGAAGGTCCTCAAGGAAA AGACGGCCGTGAAGGCCGGTGAAGTGATCGACGCGTCGGTGATGAGCCGCAAGGCGCTGCGCAGCTTCCTCGAAGCGCAG ATCGCGGACGCGAAGGCGCAGGACGTGCTGTTCTCCGTGCACCTGAAGGCGACGATGATGAAGGTCTCCGATCCGATCCT GTTCGGTCAGGTCGTCTCGGTGTTCTATCGCGACGCGCTCGAAAAGCATGCGGACGTGCTGGCCAAGGCGGGCTTCAACC CGAACAACGGCATCGGCGATCTGTACGCGCGCCTGAAGGACCTGCCGGCCGACACGCGCGAAGCGATCGAAGCCGACATC AAGGCCGAGTATGCGGTGCGTCCGCGTCTCGCGATGGTGAACTCCGACAAGGGCATCACGAACCTGCACGTGCCGAGCGA CGTGATCGTCGACGCCTCGATGCCGGCGATGATCCGCGAGTCGGGCCGCATGTGGGGCCCGGACGGCGAACTGTACGACG CGAAGGCCGTGATTCCGGACCGCTGCTACGCGGGCGTCTACCAGGCCGTGATCGAGGACTGCAAGCAGCACGGCGCGTTC GATCCGGTGACGATGGGCAGCGTGCCGAACGTCGGCCTGATGGCGCAGGCGGCCGAGGAATACGGTTCGCACGACAAGAC CTTCCAGATCCCGGCCGACGGCGTCGTGCGCGTGATCGACGAAGCGGGCAACGTGCTGCTCGAGCATGCGGTCGAGTCGG GCGACATCTGGCGCATGTGCCAGACGAAGGACGCACCGGTGCAGGACTGGGTCAAGCTCGCGGTGAACCGCGCACGCGCG ACCGGCGCGCCGGCCGTGTTCTGGCTCGATCCGGCGCGCGCGCACGACGCGCAGATCATCGCGAAGGTCGAGCGTTACCT GAAGGATCACGACACGAACGGTCTCGACATCCGCATCATGACGCCGGTCGAAGCGACGCGTTTCTCGCTCGAGCGCATCC GCGCGGGCAAGGACACGATCTCGGTCACCGGCAACGTGCTGCGCGACTACCTGACCGACCTGTTCCCGATCATGGAGCTC GGCACCAGCGCGAAGATGCTGTCGATCGTGCCGCTGATGGCGGGCGGCGGGATGTTCGAGACGGGTGCAGGCGGTTCGGC GCCGAAGCACGTGCAGCAGTTCGTCGAGGAAGGCTTCCTGCGCTGGGATTCGCTCGGCGAATTCCTCGCGCTCGCGGCGT CGCTCGAACACCTCGGCAACGCGTACCAGAACCCGAAGGCGCTCGTGCTCGCGAAGACGCTCGACCAGGCAACCGGCAAG TTCCTCGACGAGAACAAGTCGCCCGCGCGCAAGGTCGGCGGCCTCGACAACCGCGGCAGCCACTTCTACCTGTGCCTCTA CTGGGCGCAGGCGCTCGCCGCGCAGGACGAGGATGCGGCGCTGAAGTCGCAGTTCGAGGGTGTCGCGAAGGCGCTCGCCG ACAACGAGGCGCGCATTCTCGAGGAACTGTCGGCCGCGCAAGGCAAGCCGCAGAACATCGGCGGCTACTATCGCCCGAAC GTCGAGCTGACGAGCCAGGCGATGCGCCCGAGCGCGACGCTCAACGCGATCGTCGACGCGCTCTGA
Upstream 100 bases:
>100_bases CGGCTAGCCGGCGCGCCCCTTTTCGCGACCGACCCGGTCGCTCCCCGCCGGTTACCGCCGGCGATCTTCAGTCCCACTTT CACGTAGCAACGCATCGACC
Downstream 100 bases:
>100_bases TCGCAATCGGCACCGGCAGGCGGACGCGGCGGCGCTGACCGGCCGCCGCCCGACGGACGGCCGCCCCGCAACAAGAAACG CCCCGGAGGTCCGGGGCGTT
Product: isocitrate dehydrogenase
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 740
Protein sequence:
>741_residues MSTSPKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFADTLPPEQKGSDDLAELGQLTLKPEAN IIKLPNISASVPQLKAAIAELQAQGYKLPAYPEEPSTDEEKAIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHP HKMGAWQSSSKAHVAHMTEGDFYGSEKSALIAEPGSVKIELTTADGVKKVLKEKTAVKAGEVIDASVMSRKALRSFLEAQ IADAKAQDVLFSVHLKATMMKVSDPILFGQVVSVFYRDALEKHADVLAKAGFNPNNGIGDLYARLKDLPADTREAIEADI KAEYAVRPRLAMVNSDKGITNLHVPSDVIVDASMPAMIRESGRMWGPDGELYDAKAVIPDRCYAGVYQAVIEDCKQHGAF DPVTMGSVPNVGLMAQAAEEYGSHDKTFQIPADGVVRVIDEAGNVLLEHAVESGDIWRMCQTKDAPVQDWVKLAVNRARA TGAPAVFWLDPARAHDAQIIAKVERYLKDHDTNGLDIRIMTPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFVEEGFLRWDSLGEFLALAASLEHLGNAYQNPKALVLAKTLDQATGK FLDENKSPARKVGGLDNRGSHFYLCLYWAQALAAQDEDAALKSQFEGVAKALADNEARILEELSAAQGKPQNIGGYYRPN VELTSQAMRPSATLNAIVDAL
Sequences:
>Translated_741_residues MSTSPKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFADTLPPEQKGSDDLAELGQLTLKPEAN IIKLPNISASVPQLKAAIAELQAQGYKLPAYPEEPSTDEEKAIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHP HKMGAWQSSSKAHVAHMTEGDFYGSEKSALIAEPGSVKIELTTADGVKKVLKEKTAVKAGEVIDASVMSRKALRSFLEAQ IADAKAQDVLFSVHLKATMMKVSDPILFGQVVSVFYRDALEKHADVLAKAGFNPNNGIGDLYARLKDLPADTREAIEADI KAEYAVRPRLAMVNSDKGITNLHVPSDVIVDASMPAMIRESGRMWGPDGELYDAKAVIPDRCYAGVYQAVIEDCKQHGAF DPVTMGSVPNVGLMAQAAEEYGSHDKTFQIPADGVVRVIDEAGNVLLEHAVESGDIWRMCQTKDAPVQDWVKLAVNRARA TGAPAVFWLDPARAHDAQIIAKVERYLKDHDTNGLDIRIMTPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMEL GTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFVEEGFLRWDSLGEFLALAASLEHLGNAYQNPKALVLAKTLDQATGK FLDENKSPARKVGGLDNRGSHFYLCLYWAQALAAQDEDAALKSQFEGVAKALADNEARILEELSAAQGKPQNIGGYYRPN VELTSQAMRPSATLNAIVDAL >Mature_740_residues STSPKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFADTLPPEQKGSDDLAELGQLTLKPEANI IKLPNISASVPQLKAAIAELQAQGYKLPAYPEEPSTDEEKAIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPH KMGAWQSSSKAHVAHMTEGDFYGSEKSALIAEPGSVKIELTTADGVKKVLKEKTAVKAGEVIDASVMSRKALRSFLEAQI ADAKAQDVLFSVHLKATMMKVSDPILFGQVVSVFYRDALEKHADVLAKAGFNPNNGIGDLYARLKDLPADTREAIEADIK AEYAVRPRLAMVNSDKGITNLHVPSDVIVDASMPAMIRESGRMWGPDGELYDAKAVIPDRCYAGVYQAVIEDCKQHGAFD PVTMGSVPNVGLMAQAAEEYGSHDKTFQIPADGVVRVIDEAGNVLLEHAVESGDIWRMCQTKDAPVQDWVKLAVNRARAT GAPAVFWLDPARAHDAQIIAKVERYLKDHDTNGLDIRIMTPVEATRFSLERIRAGKDTISVTGNVLRDYLTDLFPIMELG TSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFVEEGFLRWDSLGEFLALAASLEHLGNAYQNPKALVLAKTLDQATGKF LDENKSPARKVGGLDNRGSHFYLCLYWAQALAAQDEDAALKSQFEGVAKALADNEARILEELSAAQGKPQNIGGYYRPNV ELTSQAMRPSATLNAIVDAL
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80233; Mature: 80102
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSPKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFADTLPPE CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCC QKGSDDLAELGQLTLKPEANIIKLPNISASVPQLKAAIAELQAQGYKLPAYPEEPSTDEE CCCCHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KAIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWQSSSKAHVAHMTEG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCC DFYGSEKSALIAEPGSVKIELTTADGVKKVLKEKTAVKAGEVIDASVMSRKALRSFLEAQ CCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IADAKAQDVLFSVHLKATMMKVSDPILFGQVVSVFYRDALEKHADVLAKAGFNPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARLKDLPADTREAIEADIKAEYAVRPRLAMVNSDKGITNLHVPSDVIVDASMPAMIRE HHHHHHHCCCCHHHHHHHHHHHHEEECCEEEEEECCCCCEEEECCCCEEECCCCCHHHHH SGRMWGPDGELYDAKAVIPDRCYAGVYQAVIEDCKQHGAFDPVTMGSVPNVGLMAQAAEE CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH YGSHDKTFQIPADGVVRVIDEAGNVLLEHAVESGDIWRMCQTKDAPVQDWVKLAVNRARA HCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCHHHHHHHHHHHHHC TGAPAVFWLDPARAHDAQIIAKVERYLKDHDTNGLDIRIMTPVEATRFSLERIRAGKDTI CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFVEEGFL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNAYQNPKALVLAKTLDQATGKFLDENKSPARKVGGLDNRGS HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HFYLCLYWAQALAAQDEDAALKSQFEGVAKALADNEARILEELSAAQGKPQNIGGYYRPN EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCC VELTSQAMRPSATLNAIVDAL CHHHHHHCCCCHHHHHHHHCC >Mature Secondary Structure STSPKIIYTLTDEAPALATYSLLPIVKAFTRSSGVAVETRDISLAGRIIAAFADTLPPE CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCCCC QKGSDDLAELGQLTLKPEANIIKLPNISASVPQLKAAIAELQAQGYKLPAYPEEPSTDEE CCCCHHHHHHCCEEECCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH KAIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWQSSSKAHVAHMTEG HHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECCC DFYGSEKSALIAEPGSVKIELTTADGVKKVLKEKTAVKAGEVIDASVMSRKALRSFLEAQ CCCCCCCCEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH IADAKAQDVLFSVHLKATMMKVSDPILFGQVVSVFYRDALEKHADVLAKAGFNPNNGIGD HHCCHHHHHEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH LYARLKDLPADTREAIEADIKAEYAVRPRLAMVNSDKGITNLHVPSDVIVDASMPAMIRE HHHHHHHCCCCHHHHHHHHHHHHEEECCEEEEEECCCCCEEEECCCCEEECCCCCHHHHH SGRMWGPDGELYDAKAVIPDRCYAGVYQAVIEDCKQHGAFDPVTMGSVPNVGLMAQAAEE CCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHH YGSHDKTFQIPADGVVRVIDEAGNVLLEHAVESGDIWRMCQTKDAPVQDWVKLAVNRARA HCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHCCCCCCHHHHHHHHHHHHHC TGAPAVFWLDPARAHDAQIIAKVERYLKDHDTNGLDIRIMTPVEATRFSLERIRAGKDTI CCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEE SVTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQFVEEGFL EHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH RWDSLGEFLALAASLEHLGNAYQNPKALVLAKTLDQATGKFLDENKSPARKVGGLDNRGS HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHCCCCCCCC HFYLCLYWAQALAAQDEDAALKSQFEGVAKALADNEARILEELSAAQGKPQNIGGYYRPN EEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCEECCC VELTSQAMRPSATLNAIVDAL CHHHHHHCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]