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The map label for this gene is lsrR [H]

Identifier: 161523890

GI number: 161523890

Start: 779650

End: 780657

Strand: Reverse

Name: lsrR [H]

Synonym: Bmul_0710

Alternate gene names: 161523890

Gene position: 780657-779650 (Counterclockwise)

Preceding gene: 161523891

Following gene: 161523887

Centisome position: 22.64

GC content: 69.35

Gene sequence:

>1008_bases
ATGCGGTACAGTGGATCCCGTTGCGCCGCACGCCGGCCCGTTCCGAACCGAATCGCTATCGTGTCCAAGTCTTCAGAAAA
ACTCGATCTCGCCACGCGCGCCGCGTGGCTCTATTACGTCGCGGGCGACACGCAGAACGAAATCGCCGAGAAGCTGCAGG
TGTCGCGCCCGGTCGCGCAGCGCCTCGTCGCCTTCGCGATCGAGAAGAACCTGATCCGCGTGCGCGTCGATCACCAACTG
GCCGACTGCCTCGATCTCGGTGCGCAGTTGTCGAAGCGCTACGGGCTCTCGATGTGCGAGGTCGTGCCGGTCGATGCGGA
CGCGCCCGATGCGATCGACCGCAAGCTCGCGGTCGCCGGTGCGCAGGTCATGGAACGCTATCTGAACGAGACGCGGCCGA
TGGTGATCGCGGTCAGCAGCGGCCGGACGCTGAAGGCGGCCGTCGCGCAGATCGCGCAGCTCGATCGCCCGCAGCACCGG
CTCGTGTCGATGGTCGGCGCGATCGCGGCCGACGGCTCGTCGAACCGCTACGACGTCGCGCAGTACATCTCCGAGAAGAC
GGGCGGCAAGCACTTCCTGCTGCCCGCCCCGCTGTTCGCCGACAGCGACGCCGAGCGCGCGCAGTGGTGCAATCACCGGC
TCTACCGGATCGTCGACGCGCTGTCCGCGGAAGCCGACGTCGCGTTCGTCGGCGTCGGCAACATCGGCCCGCACTGCCCG
CTGTACGAAGACGGCTTCATCACCGAGCAGGAACGCGACGAGATGATCGCGCGCGGCGCGGTCGCCGAACTGCTCGGCGT
ACCGATCGATGCTCAGGGCCGGCTCGTCGACGTGTCGACGAGCGCGCGCGTGACGAGCGTGCCGCTCGAGACGCCGCCCA
GGCGCCCGACGATCGCGTTCGCGGGCGGGCCGAAAAAGCGCGACGCGGTGATCGCCGCGCTGCGCGGCGGCTGGGTGTCG
GGGCTCGTGACGGACGAGACCTGCGCGCGCGCGGCGCTCGACGCGTAG

Upstream 100 bases:

>100_bases
CGCGCTGTACCGTCACGTGCGTCCGCTTTACGAACCGTCGCGCACGCGTCTCGCGTGAGCGGCCGCTGCCGCGCGGGTGC
CGAACGGCGGCCCGCGCCGC

Downstream 100 bases:

>100_bases
TCGGCTCCATGCCGAGACGGCGCGCTACCGAAGCAGCGCGCCAGACGCCACGGCGCGACGCTCACGCGCGCTGCGCCGCC
GCAAACGCATGCCCGCGCGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MRYSGSRCAARRPVPNRIAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAIEKNLIRVRVDHQL
ADCLDLGAQLSKRYGLSMCEVVPVDADAPDAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQLDRPQHR
LVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAEADVAFVGVGNIGPHCP
LYEDGFITEQERDEMIARGAVAELLGVPIDAQGRLVDVSTSARVTSVPLETPPRRPTIAFAGGPKKRDAVIAALRGGWVS
GLVTDETCARAALDA

Sequences:

>Translated_335_residues
MRYSGSRCAARRPVPNRIAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAIEKNLIRVRVDHQL
ADCLDLGAQLSKRYGLSMCEVVPVDADAPDAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQLDRPQHR
LVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAEADVAFVGVGNIGPHCP
LYEDGFITEQERDEMIARGAVAELLGVPIDAQGRLVDVSTSARVTSVPLETPPRRPTIAFAGGPKKRDAVIAALRGGWVS
GLVTDETCARAALDA
>Mature_335_residues
MRYSGSRCAARRPVPNRIAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQRLVAFAIEKNLIRVRVDHQL
ADCLDLGAQLSKRYGLSMCEVVPVDADAPDAIDRKLAVAGAQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQLDRPQHR
LVSMVGAIAADGSSNRYDVAQYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAEADVAFVGVGNIGPHCP
LYEDGFITEQERDEMIARGAVAELLGVPIDAQGRLVDVSTSARVTSVPLETPPRRPTIAFAGGPKKRDAVIAALRGGWVS
GLVTDETCARAALDA

Specific function: Regulates transcription of many different genes. In the absence of autoinducer 2 (AI-2), represses transcription of the lsrACDBFG operon and its own transcription. In the presence of AI- 2, lsrR is inactivated by binding phospho-AI-2, leading to the trans

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=307, Percent_Identity=27.3615635179153, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI87082414, Length=313, Percent_Identity=25.2396166134185, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36215; Mature: 36215

Theoretical pI: Translated: 7.82; Mature: 7.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYSGSRCAARRPVPNRIAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQ
CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHH
RLVAFAIEKNLIRVRVDHQLADCLDLGAQLSKRYGLSMCEVVPVDADAPDAIDRKLAVAG
HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
AQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQLDRPQHRLVSMVGAIAADGSSNRYDVA
HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
QYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAEADVAFVGVGNIGPHCP
HHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
LYEDGFITEQERDEMIARGAVAELLGVPIDAQGRLVDVSTSARVTSVPLETPPRRPTIAF
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEE
AGGPKKRDAVIAALRGGWVSGLVTDETCARAALDA
CCCCCCHHHHHEEHHCCCEECEECHHHHHHHHCCC
>Mature Secondary Structure
MRYSGSRCAARRPVPNRIAIVSKSSEKLDLATRAAWLYYVAGDTQNEIAEKLQVSRPVAQ
CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHH
RLVAFAIEKNLIRVRVDHQLADCLDLGAQLSKRYGLSMCEVVPVDADAPDAIDRKLAVAG
HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
AQVMERYLNETRPMVIAVSSGRTLKAAVAQIAQLDRPQHRLVSMVGAIAADGSSNRYDVA
HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
QYISEKTGGKHFLLPAPLFADSDAERAQWCNHRLYRIVDALSAEADVAFVGVGNIGPHCP
HHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
LYEDGFITEQERDEMIARGAVAELLGVPIDAQGRLVDVSTSARVTSVPLETPPRRPTIAF
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCCCCCCCCEEEE
AGGPKKRDAVIAALRGGWVSGLVTDETCARAALDA
CCCCCCHHHHHEEHHCCCEECEECHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA