Click here to switch to the map view.

The map label for this gene is yafC [H]

Identifier: 161523887

GI number: 161523887

Start: 776203

End: 777087

Strand: Reverse

Name: yafC [H]

Synonym: Bmul_0707

Alternate gene names: 161523887

Gene position: 777087-776203 (Counterclockwise)

Preceding gene: 161523890

Following gene: 161523878

Centisome position: 22.53

GC content: 68.81

Gene sequence:

>885_bases
ATGGAGAATCTGGGCGGCTTCTTCGTCTTCGTTCAAGTCGCGGAAACGCGCAGCTTCGTCGCGGCCGGCCGCGCGCTCGG
CATCTCCGCGTCGGCGGTCGGCAAGCGCATCGCGCGGCTCGAGGCGCGGCTCAACGTGCGGCTCTTTCATCGCAGCACGC
GCAGCGTCACGCTGACGGCCGAGGGCGCGCGCTTTCTCGAACGATGCCGGCGCGTGATCGCCGAAATCGATGCGGCCGAG
CGCGAGCTCACGCAAAGCGTCGAAGCGCCGCGCGGGCGGCTGCGCGTGAGCCTGCCGACGATCGGCACGCTGATGCTGCC
GGTGCTCGCCGGCTTCATGACGGCGTATCCGGAGATCGAACTGGATCTCGATTTCAGCGACCGGCTCGTCGATGTCGTCG
ACGAAGGCTTCGATGCGGTCGTGCGCACCGGTCGCCCGGCCGATTCGCGGCTCTCGTCGCGGCTGCTCGGCCATTTCCGC
CAGCATCTGGTCGCGTCGCCCGATTACCTCGAACGGCACGGCACGCCGCGCACGCCGGCCGATCTCGTGCGCCATCGCTG
CCTGCACTACCGGTTTCCGGCCACCGGCAAGCTCGAGATCTGGCCGCTGCGTGCATCGCGTTCGCACACGCCGCCGGACG
TGCCCGTGTCGATGGTCAGCAACAACGCGGAAACGCGCCTCTGCTTCGCGTTGCGCGGGCTCGGCATCGCGTGCCTGCCC
GAGTTCTTCGTGCGCGAGCCGATCGATGCCGGCACGCTGCGCACGGTGCTCGACGATTACGTCGCGAGCCGCACGCCGGT
GTACGTGCTGTGGCCGTCAGGCCACCATCCGACGCCGAAGCTGCGCGCGTTCGTCGACTACCTCGTCGAGCATCTGCAGC
TGTGA

Upstream 100 bases:

>100_bases
TGAGTGAACGAACGCTCATCGTAGGGAGCCGGCAAACGAAGAAAAACTGGGCTAGAGTTCCGGACAATCCGGACATCGAC
GTCCGCAATCGGGAATCTGC

Downstream 100 bases:

>100_bases
CGCGCGCCGCGCGTCAGGCCGCCTTCGCATGCACGCCGAGCCGGCGGAACGCCTGGCCCTGCTCGTCGAACAGATGGCAG
TGCTCGGCGTCGGCGTGCAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MENLGGFFVFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLERCRRVIAEIDAAE
RELTQSVEAPRGRLRVSLPTIGTLMLPVLAGFMTAYPEIELDLDFSDRLVDVVDEGFDAVVRTGRPADSRLSSRLLGHFR
QHLVASPDYLERHGTPRTPADLVRHRCLHYRFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLP
EFFVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQL

Sequences:

>Translated_294_residues
MENLGGFFVFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLERCRRVIAEIDAAE
RELTQSVEAPRGRLRVSLPTIGTLMLPVLAGFMTAYPEIELDLDFSDRLVDVVDEGFDAVVRTGRPADSRLSSRLLGHFR
QHLVASPDYLERHGTPRTPADLVRHRCLHYRFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLP
EFFVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQL
>Mature_294_residues
MENLGGFFVFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTAEGARFLERCRRVIAEIDAAE
RELTQSVEAPRGRLRVSLPTIGTLMLPVLAGFMTAYPEIELDLDFSDRLVDVVDEGFDAVVRTGRPADSRLSSRLLGHFR
QHLVASPDYLERHGTPRTPADLVRHRCLHYRFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLP
EFFVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=34.375, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=34.2560553633218, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=32.312925170068, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1789639, Length=297, Percent_Identity=31.986531986532, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=33.9041095890411, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=29.6551724137931, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.9655172413793, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI1789173, Length=290, Percent_Identity=26.2068965517241, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788706, Length=296, Percent_Identity=25, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=26.4808362369338, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790011, Length=250, Percent_Identity=24.4, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI145693105, Length=120, Percent_Identity=35, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=23.3676975945017, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786713, Length=273, Percent_Identity=26.3736263736264, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32874; Mature: 32874

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLGGFFVFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTA
CCCCCCEEEEEEEHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGARFLERCRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIGTLMLPVLAGFMTAYPEIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDLDFSDRLVDVVDEGFDAVVRTGRPADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPA
EECCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
DLVRHRCLHYRFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLP
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHH
EFFVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQL
HHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MENLGGFFVFVQVAETRSFVAAGRALGISASAVGKRIARLEARLNVRLFHRSTRSVTLTA
CCCCCCEEEEEEEHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHCEEEEECCCCEEEEEE
EGARFLERCRRVIAEIDAAERELTQSVEAPRGRLRVSLPTIGTLMLPVLAGFMTAYPEIE
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCEE
LDLDFSDRLVDVVDEGFDAVVRTGRPADSRLSSRLLGHFRQHLVASPDYLERHGTPRTPA
EECCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHH
DLVRHRCLHYRFPATGKLEIWPLRASRSHTPPDVPVSMVSNNAETRLCFALRGLGIACLP
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHCCCHHHHH
EFFVREPIDAGTLRTVLDDYVASRTPVYVLWPSGHHPTPKLRAFVDYLVEHLQL
HHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]