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The map label for this gene is cspA

Identifier: 161509568

GI number: 161509568

Start: 1439840

End: 1440040

Strand: Reverse

Name: cspA

Synonym: USA300HOU_1337

Alternate gene names: 161509568

Gene position: 1440040-1439840 (Counterclockwise)

Preceding gene: 161509571

Following gene: 161509567

Centisome position: 50.12

GC content: 37.81

Gene sequence:

>201_bases
ATGAAACAAGGTACAGTTAAATGGTTTAACGCTGAAAAAGGATTCGGCTTTATCGAAGTTGAAGGAGAAAATGACGTATT
CGTACATTTTTCAGCAATTAACCAAGATGGTTACAAATCATTAGAAGAAGGTCAAGCTGTTGAGTTTGAAGTAGTTGAAG
GCGACCGCGGTCCACAAGCTGCAAACGTTGTTAAACTATAA

Upstream 100 bases:

>100_bases
ATTCCATATTGCAAAGAATATTTGAGTGAAATTTGCATGTATTTTTTGTAATATGCGAATAAGCATATTGAATGAATTTT
AGTCTTGGAGGTTTCAGATT

Downstream 100 bases:

>100_bases
TTCTTAGATTTGAATCATTGATTTTAACTAACACCTTACCAAGAAGTAAGGTGTTTTTATATGCTTATTACAAATACTTA
ACGCGATGAGTTTCTCAACC

Product: cold shock protein CspA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAANVVKL

Sequences:

>Translated_66_residues
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAANVVKL
>Mature_66_residues
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQAANVVKL

Specific function: Involved in cold stress response

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=63.0769230769231, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=64.0625, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=62.9032258064516, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=59.375, Blast_Score=79, Evalue=4e-17,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=50.7462686567164, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=57.8125, Blast_Score=73, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPA_STAA3 (Q2FH36)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_493992.1
- ProteinModelPortal:   Q2FH36
- SMR:   Q2FH36
- STRING:   Q2FH36
- EnsemblBacteria:   EBSTAT00000038047
- GeneID:   3913646
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1295
- eggNOG:   COG1278
- GeneTree:   EBGT00050000024597
- HOGENOM:   HBG717773
- OMA:   WTKRTTI
- ProtClustDB:   CLSK885329
- GO:   GO:0005737
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7321; Mature: 7321

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
CCCCCEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
ANVVKL
CEEEEC
>Mature Secondary Structure
MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQDGYKSLEEGQAVEFEVVEGDRGPQA
CCCCCEEEEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCCC
ANVVKL
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA