Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is 16119864
Identifier: 16119864
GI number: 16119864
Start: 64358
End: 65185
Strand: Direct
Name: 16119864
Synonym: Atu6052
Alternate gene names: NA
Gene position: 64358-65185 (Clockwise)
Preceding gene: 16119863
Following gene: 41223325
Centisome position: 30.04
GC content: 59.78
Gene sequence:
>828_bases ATGCTGGTCGCGATGGCGACGGGCTATCTGGATGCCTCCTTGAACACGACGGCCTATTTTCGGAGTTTGGAGCAGTCGGA GAAGGTGGGGGTTTCGTTCCTTTTCGGCGAGGCGTTCACGCACTGGTATGCTCAGAGTCAGATGAGCGTGCAGTATCTCG TGCATGTCGCCGGCCTTGCCTCCTGTCGATGGGGATCCCCAACGGCTCCGGTCGCGCCGAAAGCTGGCGCAGCGCCTCCT CCTCCAAAATCGCGTCCCGATTTTATCGGCATCAAGCGAAGGGAACGCCATGTGTTCGAGAGCAAGGGTCGCATCCGAGC GCCAGCCGCAAGCACCGTTGCGAAGGCACTGGGGCAGGTTTCGGCGCTTCACACGGTCAACGGACGGGCGCCGACCACAC GCTGTGCAAACTTCTTCATGTTCAAGGCCGGTGGTGCAGAGGGCAGAGTGCTGGATCCGCCGGCAAAGGGTGACGGCATC ACCGTGACGTTTGATCTCTTCGAAGCGATTACACGAGCCTACTCCATTATCCTCGATCAGCCGGTACTTGATCTATCCGA TCAGGTTGGTGCGGGTTATGTCGGACGCGAGATCGATGATGGTGTGTTCTTGGGTATCGACAAGGAAATCCTTGCCTTGG TACGAGAGCGGCCCCCGACTGAAGCAACGCGTCGCAGGCGTGTCGCCCAGGTCTTCTCTGCTCTTGAAGATCGGTCGCAG AACTATGCGGGTCGGCAGGATAGAAGTGTTTCGTCCGGCCTTGACGGGGTCCTGCTTCTTGACCGCCGTTCGCCGCGCGC CCTTCGACGCTTCCGGACGCAGGGTTAA
Upstream 100 bases:
>100_bases GTTGCCAGCGACACATGCCGACATCATCCGCTCGTTGCTGACCGTCGGCTATCCCAGCCGTCGAGCCGCTGTCCGCACCG TTGGCCCCTGGCGGGAGAAA
Downstream 100 bases:
>100_bases ATGGCCGACTTTATGTCGGTGTGTTGGTTTCACCTTCTGACCAGCAAATCATGTGATTTACTACAACCCTATAATTCCAT CAGAGATGCTGGCTCCATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 275; Mature: 275
Protein sequence:
>275_residues MLVAMATGYLDASLNTTAYFRSLEQSEKVGVSFLFGEAFTHWYAQSQMSVQYLVHVAGLASCRWGSPTAPVAPKAGAAPP PPKSRPDFIGIKRRERHVFESKGRIRAPAASTVAKALGQVSALHTVNGRAPTTRCANFFMFKAGGAEGRVLDPPAKGDGI TVTFDLFEAITRAYSIILDQPVLDLSDQVGAGYVGREIDDGVFLGIDKEILALVRERPPTEATRRRRVAQVFSALEDRSQ NYAGRQDRSVSSGLDGVLLLDRRSPRALRRFRTQG
Sequences:
>Translated_275_residues MLVAMATGYLDASLNTTAYFRSLEQSEKVGVSFLFGEAFTHWYAQSQMSVQYLVHVAGLASCRWGSPTAPVAPKAGAAPP PPKSRPDFIGIKRRERHVFESKGRIRAPAASTVAKALGQVSALHTVNGRAPTTRCANFFMFKAGGAEGRVLDPPAKGDGI TVTFDLFEAITRAYSIILDQPVLDLSDQVGAGYVGREIDDGVFLGIDKEILALVRERPPTEATRRRRVAQVFSALEDRSQ NYAGRQDRSVSSGLDGVLLLDRRSPRALRRFRTQG >Mature_275_residues MLVAMATGYLDASLNTTAYFRSLEQSEKVGVSFLFGEAFTHWYAQSQMSVQYLVHVAGLASCRWGSPTAPVAPKAGAAPP PPKSRPDFIGIKRRERHVFESKGRIRAPAASTVAKALGQVSALHTVNGRAPTTRCANFFMFKAGGAEGRVLDPPAKGDGI TVTFDLFEAITRAYSIILDQPVLDLSDQVGAGYVGREIDDGVFLGIDKEILALVRERPPTEATRRRRVAQVFSALEDRSQ NYAGRQDRSVSSGLDGVLLLDRRSPRALRRFRTQG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29983; Mature: 29983
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: PS00599 AA_TRANSFER_CLASS_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVAMATGYLDASLNTTAYFRSLEQSEKVGVSFLFGEAFTHWYAQSQMSVQYLVHVAGLA CEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SCRWGSPTAPVAPKAGAAPPPPKSRPDFIGIKRRERHVFESKGRIRAPAASTVAKALGQV HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCEECCHHHHHHHHHHHH SALHTVNGRAPTTRCANFFMFKAGGAEGRVLDPPAKGDGITVTFDLFEAITRAYSIILDQ HHHHCCCCCCCHHHHHHEEEEECCCCCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHCC PVLDLSDQVGAGYVGREIDDGVFLGIDKEILALVRERPPTEATRRRRVAQVFSALEDRSQ CCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH NYAGRQDRSVSSGLDGVLLLDRRSPRALRRFRTQG CCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHCCC >Mature Secondary Structure MLVAMATGYLDASLNTTAYFRSLEQSEKVGVSFLFGEAFTHWYAQSQMSVQYLVHVAGLA CEEEEECCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SCRWGSPTAPVAPKAGAAPPPPKSRPDFIGIKRRERHVFESKGRIRAPAASTVAKALGQV HCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHCCCCEECCHHHHHHHHHHHH SALHTVNGRAPTTRCANFFMFKAGGAEGRVLDPPAKGDGITVTFDLFEAITRAYSIILDQ HHHHCCCCCCCHHHHHHEEEEECCCCCCCEECCCCCCCCEEEEHHHHHHHHHHHHHHHCC PVLDLSDQVGAGYVGREIDDGVFLGIDKEILALVRERPPTEATRRRRVAQVFSALEDRSQ CCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH NYAGRQDRSVSSGLDGVLLLDRRSPRALRRFRTQG CCCCCCCCHHHCCCCEEEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA