| Definition | Shewanella baltica OS195 chromosome, complete genome. |
|---|---|
| Accession | NC_009997 |
| Length | 5,347,283 |
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The map label for this gene is menH [H]
Identifier: 160877391
GI number: 160877391
Start: 5069487
End: 5070281
Strand: Direct
Name: menH [H]
Synonym: Sbal195_4289
Alternate gene names: 160877391
Gene position: 5069487-5070281 (Clockwise)
Preceding gene: 160877390
Following gene: 160877392
Centisome position: 94.8
GC content: 50.31
Gene sequence:
>795_bases ATGCCAACCATGGCCCGTTACGGCGATCCTTCACTACCGACCTTAGTGCTACTACATGGCTTTTTAGGCACTAAGGCCGA CTGGTTGCCGTTAATGCCTGCGCTAAGCCAGCACTTTCATTGTATTTGTTTGGATCTGCCGGGCCATGGAGATAATCAAG CTGAAGGGTCGACTGAGGCTAAGCTCGATTTTGATTTTTGCGTCGAAAACATAGTGACGCGGCTCGATAGCCTTAATCCA AGTCCCGAACCGTTTCATCTCTACGGTTATTCCTTAGGCGGGCGTATTGCCTTGCACCTTGCAAAAGCCTATCCGCAGCG CTTGTTAAGTCTGAACCTCGAATCCTGCCATCCAGGACTGGTAGACCCGCAAGAAAAAACGGCCAGAACCAAGAATGATG CCCAATGGGCCGAGCGTTTATTGCACCTGGCTAGCAAAGATTTTTTAAGCCTGTGGTATCAGCAGCCCGTGTTTGCTGAC ATGACTGTGGCCAAACGTAAAGCCTTAATCGAGCATCGTTCTGCAGCATTAGATCTGCATCCTAAACAGCTGCTTAAAGA GGTATTCTTAGCCACTTCACTTGCGCGCCAAGCATCGATGTGGGATGTGCCTTCGCAACTTGCCTGTGAGTGCCATTTCT TTGTGGGCAGCCAAGATACCAAGTTCCACGCCCTCGCCCAAGAATGGCAATTACACGCGCCTATTCTCGTCCACAGTATT AGCGGCGCCGGACACAACATACACCAAGCAGCTCCCGAGGCATTAATCGCAACAATAGTTAAGCTGCTAGGGTAA
Upstream 100 bases:
>100_bases CGCTGGATTTTCAGGGGGCTTCGATCATTGAAGTCAATGTGAGCCAAAACCAAGCCAGCGACCAAATCGCCGCGCTCAAC CTTTGGGTGAAACAAAGCTA
Downstream 100 bases:
>100_bases ACAACACAATTAAAATGTAGGAAATATATGATCTTAACTTCGCTTAACCTGTATCAATATCGACTACCGCTCGATGTATT ATTGCCCGTAGGCAAGCAAC
Product: alpha/beta hydrolase fold protein
Products: NA
Alternate protein names: SHCHC synthase [H]
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MPTMARYGDPSLPTLVLLHGFLGTKADWLPLMPALSQHFHCICLDLPGHGDNQAEGSTEAKLDFDFCVENIVTRLDSLNP SPEPFHLYGYSLGGRIALHLAKAYPQRLLSLNLESCHPGLVDPQEKTARTKNDAQWAERLLHLASKDFLSLWYQQPVFAD MTVAKRKALIEHRSAALDLHPKQLLKEVFLATSLARQASMWDVPSQLACECHFFVGSQDTKFHALAQEWQLHAPILVHSI SGAGHNIHQAAPEALIATIVKLLG
Sequences:
>Translated_264_residues MPTMARYGDPSLPTLVLLHGFLGTKADWLPLMPALSQHFHCICLDLPGHGDNQAEGSTEAKLDFDFCVENIVTRLDSLNP SPEPFHLYGYSLGGRIALHLAKAYPQRLLSLNLESCHPGLVDPQEKTARTKNDAQWAERLLHLASKDFLSLWYQQPVFAD MTVAKRKALIEHRSAALDLHPKQLLKEVFLATSLARQASMWDVPSQLACECHFFVGSQDTKFHALAQEWQLHAPILVHSI SGAGHNIHQAAPEALIATIVKLLG >Mature_263_residues PTMARYGDPSLPTLVLLHGFLGTKADWLPLMPALSQHFHCICLDLPGHGDNQAEGSTEAKLDFDFCVENIVTRLDSLNPS PEPFHLYGYSLGGRIALHLAKAYPQRLLSLNLESCHPGLVDPQEKTARTKNDAQWAERLLHLASKDFLSLWYQQPVFADM TVAKRKALIEHRSAALDLHPKQLLKEVFLATSLARQASMWDVPSQLACECHFFVGSQDTKFHALAQEWQLHAPILVHSIS GAGHNIHQAAPEALIATIVKLLG
Specific function: Catalyzes a proton abstraction reaction that results in 2,5-elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6- hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC). Is also
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AB hydrolase superfamily. MenH family [H]
Homologues:
Organism=Homo sapiens, GI189027141, Length=135, Percent_Identity=34.8148148148148, Blast_Score=74, Evalue=9e-14, Organism=Escherichia coli, GI1788598, Length=260, Percent_Identity=34.6153846153846, Blast_Score=129, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR022485 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =4.2.99.20 [H]
Molecular weight: Translated: 29288; Mature: 29157
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTMARYGDPSLPTLVLLHGFLGTKADWLPLMPALSQHFHCICLDLPGHGDNQAEGSTEA CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC KLDFDFCVENIVTRLDSLNPSPEPFHLYGYSLGGRIALHLAKAYPQRLLSLNLESCHPGL CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCC VDPQEKTARTKNDAQWAERLLHLASKDFLSLWYQQPVFADMTVAKRKALIEHRSAALDLH CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC PKQLLKEVFLATSLARQASMWDVPSQLACECHFFVGSQDTKFHALAQEWQLHAPILVHSI HHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEC SGAGHNIHQAAPEALIATIVKLLG CCCCCCHHHHHHHHHHHHHHHHHC >Mature Secondary Structure PTMARYGDPSLPTLVLLHGFLGTKADWLPLMPALSQHFHCICLDLPGHGDNQAEGSTEA CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCC KLDFDFCVENIVTRLDSLNPSPEPFHLYGYSLGGRIALHLAKAYPQRLLSLNLESCHPGL CCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHCCCCC VDPQEKTARTKNDAQWAERLLHLASKDFLSLWYQQPVFADMTVAKRKALIEHRSAALDLH CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC PKQLLKEVFLATSLARQASMWDVPSQLACECHFFVGSQDTKFHALAQEWQLHAPILVHSI HHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEC SGAGHNIHQAAPEALIATIVKLLG CCCCCCHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA