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The map label for this gene is nrfC [H]

Identifier: 160877386

GI number: 160877386

Start: 5064495

End: 5065181

Strand: Reverse

Name: nrfC [H]

Synonym: Sbal195_4284

Alternate gene names: 160877386

Gene position: 5065181-5064495 (Counterclockwise)

Preceding gene: 160877387

Following gene: 160877385

Centisome position: 94.72

GC content: 48.33

Gene sequence:

>687_bases
ATGGAAAATTCAAAAAGAAGATTTCTAAAAGGCACATGTGCCTTATTTGCTGGCGCTACGGGCGCATCACTGCTCGCCAC
AGTGAATGCCGCTGAAGGTGCTAAAGCAGAGTCAGATATTAAATATGCGATGATTCATGATGAAACTAAGTGTATTGGTT
GCCGCGCATGTGAAGTGGCATGTCGTGAAACCAATCAAGTGCCAGAAGGCGTTTCTCGGGTCAGGATTGAACAAACTGGA
CCGTTCGGTGAGTATCCGAATGAGTATTATCATTTCAGCCGTATCTCTTGCCAGCATTGTGAAGATGCACCTTGTGTCAA
CGTCTGCCCAACAGGCGCTGCCTTTATTGATAAAGAAACCGGCATAGTGTCAGTCAATGCGTGGAAATGTGTCGGCTGCC
AATATTGTATTGCGGCTTGCCCTTACAAAATTCGCTTTATTAACCCAGTCACCCACGCGGCGGATAAGTGTGATTTCTGC
CGTGAGACGAATCTCGCTCAAGGAAAACAGCCTGCCTGCGTTGAGGCGTGTCCGACTAAGGCGTTAGTGTTCGGTAATTT
AAAAGATCCGACGTCTGAGTTAGTACAAGTGCTGCGCGCTAATCCAACTCAACGCGCGAAAGTCGCCCTCGGAACGCGAC
CTAAGTTGTTCCGTATCCTGGCGAAATCCGGGGAGGTGATACTATGA

Upstream 100 bases:

>100_bases
TCATAAATTACATAGCCCAACCGAACCTATGGCGGATATGACGCCAAAAGTTCGCAGTGAGCTGTGCCGCAATTGCCATA
GTGGCCAGTAGGGGTAGGTT

Downstream 100 bases:

>100_bases
GTGCCCTACATTTTGATACCTTAGTCTGGCATTGGCCGATTGCGATCTACCTGTTTTTGGCGGGTGTATCAGCAGGGGCT
ATGTTCTTCGCCGTACTGTT

Product: 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein

Products: oxidized cytochrome C552; NH3 [C]

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MENSKRRFLKGTCALFAGATGASLLATVNAAEGAKAESDIKYAMIHDETKCIGCRACEVACRETNQVPEGVSRVRIEQTG
PFGEYPNEYYHFSRISCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPYKIRFINPVTHAADKCDFC
RETNLAQGKQPACVEACPTKALVFGNLKDPTSELVQVLRANPTQRAKVALGTRPKLFRILAKSGEVIL

Sequences:

>Translated_228_residues
MENSKRRFLKGTCALFAGATGASLLATVNAAEGAKAESDIKYAMIHDETKCIGCRACEVACRETNQVPEGVSRVRIEQTG
PFGEYPNEYYHFSRISCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPYKIRFINPVTHAADKCDFC
RETNLAQGKQPACVEACPTKALVFGNLKDPTSELVQVLRANPTQRAKVALGTRPKLFRILAKSGEVIL
>Mature_228_residues
MENSKRRFLKGTCALFAGATGASLLATVNAAEGAKAESDIKYAMIHDETKCIGCRACEVACRETNQVPEGVSRVRIEQTG
PFGEYPNEYYHFSRISCQHCEDAPCVNVCPTGAAFIDKETGIVSVNAWKCVGCQYCIAACPYKIRFINPVTHAADKCDFC
RETNLAQGKQPACVEACPTKALVFGNLKDPTSELVQVLRANPTQRAKVALGTRPKLFRILAKSGEVIL

Specific function: Probably involved in the transfer of electrons from the quinone pool to the type-c cytochromes [H]

COG id: COG0437

COG function: function code C; Fe-S-cluster-containing hydrogenase components 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI2367345, Length=228, Percent_Identity=59.6491228070175, Blast_Score=275, Evalue=2e-75,
Organism=Escherichia coli, GI226510944, Length=225, Percent_Identity=46.6666666666667, Blast_Score=198, Evalue=2e-52,
Organism=Escherichia coli, GI1787122, Length=183, Percent_Identity=35.5191256830601, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787872, Length=183, Percent_Identity=35.5191256830601, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1789370, Length=252, Percent_Identity=30.5555555555556, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787749, Length=165, Percent_Identity=33.9393939393939, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790326, Length=180, Percent_Identity=35, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367245, Length=143, Percent_Identity=40.5594405594406, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1789067, Length=155, Percent_Identity=36.7741935483871, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI87082180, Length=170, Percent_Identity=33.5294117647059, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87082179, Length=153, Percent_Identity=32.0261437908497, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788811, Length=148, Percent_Identity=35.1351351351351, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1787963, Length=204, Percent_Identity=26.9607843137255, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787740, Length=106, Percent_Identity=33.0188679245283, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1789079, Length=182, Percent_Identity=31.8681318681319, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787478, Length=110, Percent_Identity=31.8181818181818, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR017567
- InterPro:   IPR006311 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24788; Mature: 24788

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
7.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENSKRRFLKGTCALFAGATGASLLATVNAAEGAKAESDIKYAMIHDETKCIGCRACEVA
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEECHHHHHHH
CRETNQVPEGVSRVRIEQTGPFGEYPNEYYHFSRISCQHCEDAPCVNVCPTGAAFIDKET
HHHCCCCCCCHHHEEEECCCCCCCCCCHHEEECCCCCCCCCCCCCCEECCCCCEEEECCC
GIVSVNAWKCVGCQYCIAACPYKIRFINPVTHAADKCDFCRETNLAQGKQPACVEACPTK
CEEEECCEEECCHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
ALVFGNLKDPTSELVQVLRANPTQRAKVALGTRPKLFRILAKSGEVIL
EEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCEEC
>Mature Secondary Structure
MENSKRRFLKGTCALFAGATGASLLATVNAAEGAKAESDIKYAMIHDETKCIGCRACEVA
CCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCEECHHHHHHH
CRETNQVPEGVSRVRIEQTGPFGEYPNEYYHFSRISCQHCEDAPCVNVCPTGAAFIDKET
HHHCCCCCCCHHHEEEECCCCCCCCCCHHEEECCCCCCCCCCCCCCEECCCCCEEEECCC
GIVSVNAWKCVGCQYCIAACPYKIRFINPVTHAADKCDFCRETNLAQGKQPACVEACPTK
CEEEECCEEECCHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
ALVFGNLKDPTSELVQVLRANPTQRAKVALGTRPKLFRILAKSGEVIL
EEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHCCCCEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced cytochrome C552; nitrite [C]

Specific reaction: reduced cytochrome C552 + nitrite = oxidized cytochrome C552 + NH3 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]