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The map label for this gene is ycfD [H]

Identifier: 160875571

GI number: 160875571

Start: 2909731

End: 2910888

Strand: Reverse

Name: ycfD [H]

Synonym: Sbal195_2459

Alternate gene names: 160875571

Gene position: 2910888-2909731 (Counterclockwise)

Preceding gene: 160875573

Following gene: 160875567

Centisome position: 54.44

GC content: 50.17

Gene sequence:

>1158_bases
ATGCAACTCGATATTAACGGCTTAACGCCCGCGCAATTTCTAGCAGAGTATTGGCAGAAAAAACCCTTGGTGATCCGCCA
AGGATTCAAGCATTTTCAAGATTTAGTTTCGCCCGAAGAATTAGCTGGCTTAGCCATGGATGAGCTGGTGGAATCTCGGC
GGGTGTACCAACAAGCTGGCCAATGGCAGGCGGAATTTGGTCCCTTTGATTCCTACGATCATCTCGGTGAACGGGATTGG
ACTTTAATAGTCCAAGCCTTGAATAACTGGGTGCCCGATGCGGAAGCCTTGATCCAATGCTTCGATTTTATTCCGCGCTG
GCGTTTAGATGATGTGATGGTGAGCTTTGCAACGCCTGGCGGTGGCGTGGGGCCGCATATCGATCTGTATGATGTGTTTA
TTTGCCAAGGTTCGGGACGTCGCCGTTGGCGTGTGGGCGATCTGGGGCCGCACAAAGAGTTTGCCGCCCATCCCGCTTTG
CTGCACACCGAAGCCTTTGACCCGATTATCGATACTGAGTTGTTGCCCGGCGACATCCTTTATATTCCCCCTGGATTCCC
CCATGACGGCATAACCTTAGAACAGTCGTTAAGTTTTTCAGTGGGTTATCGCACCGCCTCCGCCAAAGATATGATAAGTG
CTTTGGCCGATCATTTGTCTGAACAGGATTTAGGCGCACAGCAGATTTCAGATCCAGACCGCGAGCTGACAACGCGCAGT
GGTTGTGTCGATAATGGCGATTTAGCGCGGCTACGTACCCAACTGACCAATATGTTGACCGATGAACTGGTGAGCGAGTT
TTCGGGCCGCTATTTAACTCAGTCAAAATGCGCCTTAGATTTACCCGATGAGCCATTGGACATCACGCAAGACGAAGTGC
TCGCTTGGCTCGATGAGCAGCCGCTTATTCGCCTCGGCGGGCTGCGCTGTTTGTATTTTGATATTAATGTGGCACAGGGC
GTTGTCTATATTAATGGTGATAAGTATCCGCTTTCAGCCGAATTGGCTGCAGTGATCCCATTACTATGTGATAGTAATCA
GTTGGATAAAGCTGCCTTAGCCCCTTGGTTAGCCCATGCTGATTTGCTCACGCAACTTACCGAGTGGGTGAATCTAGGCT
ACTGGTACTTTGAAGATCTCAGCGATGAAGAGTGTTAG

Upstream 100 bases:

>100_bases
ACAAAAGACTTAATGCTTTGTTGATCCGGTCGAGCTTTCTTGGTTTCGCTTCCTGTTAGCATTTGCTGCTATGAATAACA
GTTTGGTTTGTGAGCAACCC

Downstream 100 bases:

>100_bases
GGCGGAATGAGCCAAAGCTTGATGGGTGTTAATGCCACTTTAGCGTTAACACCCAACGGGGCTTAGCGCTATATATTTTT
TAGATCTAGATGGGTTTTAG

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MQLDINGLTPAQFLAEYWQKKPLVIRQGFKHFQDLVSPEELAGLAMDELVESRRVYQQAGQWQAEFGPFDSYDHLGERDW
TLIVQALNNWVPDAEALIQCFDFIPRWRLDDVMVSFATPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDTELLPGDILYIPPGFPHDGITLEQSLSFSVGYRTASAKDMISALADHLSEQDLGAQQISDPDRELTTRS
GCVDNGDLARLRTQLTNMLTDELVSEFSGRYLTQSKCALDLPDEPLDITQDEVLAWLDEQPLIRLGGLRCLYFDINVAQG
VVYINGDKYPLSAELAAVIPLLCDSNQLDKAALAPWLAHADLLTQLTEWVNLGYWYFEDLSDEEC

Sequences:

>Translated_385_residues
MQLDINGLTPAQFLAEYWQKKPLVIRQGFKHFQDLVSPEELAGLAMDELVESRRVYQQAGQWQAEFGPFDSYDHLGERDW
TLIVQALNNWVPDAEALIQCFDFIPRWRLDDVMVSFATPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDTELLPGDILYIPPGFPHDGITLEQSLSFSVGYRTASAKDMISALADHLSEQDLGAQQISDPDRELTTRS
GCVDNGDLARLRTQLTNMLTDELVSEFSGRYLTQSKCALDLPDEPLDITQDEVLAWLDEQPLIRLGGLRCLYFDINVAQG
VVYINGDKYPLSAELAAVIPLLCDSNQLDKAALAPWLAHADLLTQLTEWVNLGYWYFEDLSDEEC
>Mature_385_residues
MQLDINGLTPAQFLAEYWQKKPLVIRQGFKHFQDLVSPEELAGLAMDELVESRRVYQQAGQWQAEFGPFDSYDHLGERDW
TLIVQALNNWVPDAEALIQCFDFIPRWRLDDVMVSFATPGGGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPAL
LHTEAFDPIIDTELLPGDILYIPPGFPHDGITLEQSLSFSVGYRTASAKDMISALADHLSEQDLGAQQISDPDRELTTRS
GCVDNGDLARLRTQLTNMLTDELVSEFSGRYLTQSKCALDLPDEPLDITQDEVLAWLDEQPLIRLGGLRCLYFDINVAQG
VVYINGDKYPLSAELAAVIPLLCDSNQLDKAALAPWLAHADLLTQLTEWVNLGYWYFEDLSDEEC

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=369, Percent_Identity=43.6314363143631, Blast_Score=307, Evalue=6e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43256; Mature: 43256

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDINGLTPAQFLAEYWQKKPLVIRQGFKHFQDLVSPEELAGLAMDELVESRRVYQQAG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
QWQAEFGPFDSYDHLGERDWTLIVQALNNWVPDAEALIQCFDFIPRWRLDDVMVSFATPG
CCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPALLHTEAFDPIIDTELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHEEHHHCCCHHCCCCCCCCEE
YIPPGFPHDGITLEQSLSFSVGYRTASAKDMISALADHLSEQDLGAQQISDPDRELTTRS
EECCCCCCCCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHC
GCVDNGDLARLRTQLTNMLTDELVSEFSGRYLTQSKCALDLPDEPLDITQDEVLAWLDEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCHHHHHHHCCCC
PLIRLGGLRCLYFDINVAQGVVYINGDKYPLSAELAAVIPLLCDSNQLDKAALAPWLAHA
CCEECCCEEEEEEEEEEECEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DLLTQLTEWVNLGYWYFEDLSDEEC
HHHHHHHHHHHCCHHEECCCCCCCC
>Mature Secondary Structure
MQLDINGLTPAQFLAEYWQKKPLVIRQGFKHFQDLVSPEELAGLAMDELVESRRVYQQAG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
QWQAEFGPFDSYDHLGERDWTLIVQALNNWVPDAEALIQCFDFIPRWRLDDVMVSFATPG
CCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHEEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDLGPHKEFAAHPALLHTEAFDPIIDTELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHEEHHHCCCHHCCCCCCCCEE
YIPPGFPHDGITLEQSLSFSVGYRTASAKDMISALADHLSEQDLGAQQISDPDRELTTRS
EECCCCCCCCCCHHHCCCEEECCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHC
GCVDNGDLARLRTQLTNMLTDELVSEFSGRYLTQSKCALDLPDEPLDITQDEVLAWLDEQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCCCHHHHHHHCCCC
PLIRLGGLRCLYFDINVAQGVVYINGDKYPLSAELAAVIPLLCDSNQLDKAALAPWLAHA
CCEECCCEEEEEEEEEEECEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
DLLTQLTEWVNLGYWYFEDLSDEEC
HHHHHHHHHHHCCHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]