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The map label for this gene is yeaM [H]

Identifier: 160875567

GI number: 160875567

Start: 2905235

End: 2906077

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal195_2455

Alternate gene names: 160875567

Gene position: 2906077-2905235 (Counterclockwise)

Preceding gene: 160875571

Following gene: 160875563

Centisome position: 54.35

GC content: 50.3

Gene sequence:

>843_bases
ATGTCAAAACCTGTTCCTAAAGCGACATTGTTAACGCCCAGTGACGTGGCGTTTATCACAGATGCCAATCGACCTGTGCT
GACCCATACTCGCAATATGGCGGCGGAAGCGGGCATTGAGCCTCATTCACATCCGCGGGGGCAGCTACTTTGGGCCGCCA
AAGGCTTGTTACGTGTCCGCAGTGAAAATGCCGTCTGGGTGGTACCTTCAACCCATGCGGTGTGGATCCCCTGCAATTTG
CCCCATCAAGTGAACAGCGAAACCCACGCCCACACTCGCAATATCTATATTGATCCTAGCTATGATGTTAGGCCACAGGA
TACAAAAGTGGTGATGGTGACGATGACAGCGCTGATGCGCGAACTGGTGCTCAAACTCTGTGAGAGTTCACACCTTTTAG
GCAGTGGACAACTGCATCGGCTGGGTTTGGTTGCCATTGATGAGCTCGAAACTCTGGACAGCCTAGATGCTCATTTACCC
GCAGGCTCAGATCCAAGACTCAGCCGCTTGATCCAAAAGTTGATCCGGCACCCAACAGTGAATTACACCCTGACCGAGTT
AGCCGAAATGGGCGGCGCGAGTGTGAGAACGATTGAACGACTATTCAAAGCTGAAACTGGGCTCACTTATCGACAATGGC
GGCAAAGGTTTCGTTTGTTAAATTCGCTTGAAAGCTTAAGCCAAGGAGAGAGCACGACTAGGGTGGCACATAGTCTAGGT
TATCTGAGCGTCAGCAGTTTCAGTGCGGCTTTTAAAATGCAATTTGGTTGCACGCCGCAAGATTATCCGCAGCATAAGCT
GATGAAAAACAGGAAAAATCAGTTTACTCCCGCGCAAGAATAA

Upstream 100 bases:

>100_bases
ACGCCAATAAAACGTTTCATGTTTACCGACCTATTGGGTTGAATACGTAAAAGATGCCAACTAAGATAACTGACTTGGTC
TGGCGTTTTAAGAGGGTAAT

Downstream 100 bases:

>100_bases
ACTGAGTCAGCCATAACAAATATCTATGTTTTGTATATCGATTCTTATAATTGGCCAGTCAGAGTGGAGTTAATATTCGT
GCTATCTTGTGGGAGTCGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSKPVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNL
PHQVNSETHAHTRNIYIDPSYDVRPQDTKVVMVTMTALMRELVLKLCESSHLLGSGQLHRLGLVAIDELETLDSLDAHLP
AGSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
YLSVSSFSAAFKMQFGCTPQDYPQHKLMKNRKNQFTPAQE

Sequences:

>Translated_280_residues
MSKPVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNL
PHQVNSETHAHTRNIYIDPSYDVRPQDTKVVMVTMTALMRELVLKLCESSHLLGSGQLHRLGLVAIDELETLDSLDAHLP
AGSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
YLSVSSFSAAFKMQFGCTPQDYPQHKLMKNRKNQFTPAQE
>Mature_279_residues
SKPVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNLP
HQVNSETHAHTRNIYIDPSYDVRPQDTKVVMVTMTALMRELVLKLCESSHLLGSGQLHRLGLVAIDELETLDSLDAHLPA
GSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLGY
LSVSSFSAAFKMQFGCTPQDYPQHKLMKNRKNQFTPAQE

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=222, Percent_Identity=34.2342342342342, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31388; Mature: 31257

Theoretical pI: Translated: 9.64; Mature: 9.64

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVR
CCCCCCCEEEECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEE
SENAVWVVPSTHAVWIPCNLPHQVNSETHAHTRNIYIDPSYDVRPQDTKVVMVTMTALMR
CCCEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
ELVLKLCESSHLLGSGQLHRLGLVAIDELETLDSLDAHLPAGSDPRLSRLIQKLIRHPTV
HHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
NYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
CHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YLSVSSFSAAFKMQFGCTPQDYPQHKLMKNRKNQFTPAQE
CHHHHHHCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SKPVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVR
CCCCCCEEEECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEE
SENAVWVVPSTHAVWIPCNLPHQVNSETHAHTRNIYIDPSYDVRPQDTKVVMVTMTALMR
CCCEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHH
ELVLKLCESSHLLGSGQLHRLGLVAIDELETLDSLDAHLPAGSDPRLSRLIQKLIRHPTV
HHHHHHHHCCCCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
NYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
CHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YLSVSSFSAAFKMQFGCTPQDYPQHKLMKNRKNQFTPAQE
CHHHHHHCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]