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The map label for this gene is yvbF

Identifier: 16080437

GI number: 16080437

Start: 3471266

End: 3471823

Strand: Direct

Name: yvbF

Synonym: BSU33840

Alternate gene names: 16080437

Gene position: 3471266-3471823 (Clockwise)

Preceding gene: 16080430

Following gene: 16080439

Centisome position: 82.34

GC content: 42.11

Gene sequence:

>558_bases
GTGAAAAAAACCGCTCTCGACATCATTGAACATGCTGAAGAGCATCTCATTGAGAAGATTGCCGAAAATATGCATACGTT
TGGAATGCCTTCAACTGTCGGACGTGTGCTCGGAATTATTTATATGAATCGAAAACCAATGACCTTAAGCGAGCTCTCTG
AGGCAACGGGCATGAGCAAAACACGGATGAGCCAGGTTGTCCGGGAAATGATCGATGCCAATATCGCCGAAAAGGTGTTT
GAAAAAGGCGTACGAAAAGACCTTTATGACGTCGAGCAGGATTATTATCAAACCTTCATTTCTTTATTTGCGGCGAATTG
GACAAAGGTCGTGAGCAAAAACAAAGTGCTGTATAAAAAATTAAACCGGGAGCTGAGTGATCTTTTACAAAGGGACGGGC
TTACCCCGGAAGCGGAAGAGAAAGTCAATCAGCTGCTGAATGAATTAAAAGAATGGCTTCATTACTATGATTGGCTGAGC
AGGTTGATTGAATTTTTTGAGAGTGAGGAAGTCTTTCGGTATGTGCCGAAAACAAAAGAATGCAGCTCTCTAAAATAA

Upstream 100 bases:

>100_bases
CCGGATACCTCCCACTTCCTCTGCATTCAGCTATTTTCAACACCAGGAAGAAATATGATATATTGACACCATCAATTGCC
ATTTGAAGGGATGATCAGCT

Downstream 100 bases:

>100_bases
GAGAGCTGCTTTTTGCATCATGAAGTTAAGACCGGAAACATGCCTTTCAGCCCGGCACCAATCATCCCGACCGCAACCAC
GGCTAAGATTAATCCCATCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKKTALDIIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVF
EKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDLLQRDGLTPEAEEKVNQLLNELKEWLHYYDWLS
RLIEFFESEEVFRYVPKTKECSSLK

Sequences:

>Translated_185_residues
MKKTALDIIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVF
EKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDLLQRDGLTPEAEEKVNQLLNELKEWLHYYDWLS
RLIEFFESEEVFRYVPKTKECSSLK
>Mature_185_residues
MKKTALDIIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSKTRMSQVVREMIDANIAEKVF
EKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKKLNRELSDLLQRDGLTPEAEEKVNQLLNELKEWLHYYDWLS
RLIEFFESEEVFRYVPKTKECSSLK

Specific function: Unknown

COG id: COG1510

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YVBF_BACSU (O34709)

Other databases:

- EMBL:   AF009352
- EMBL:   AL009126
- PIR:   E70029
- RefSeq:   NP_391264.1
- ProteinModelPortal:   O34709
- SMR:   O34709
- EnsemblBacteria:   EBBACT00000002714
- GeneID:   936258
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33840
- NMPDR:   fig|224308.1.peg.3390
- GenoList:   BSU33840
- GeneTree:   EBGT00050000001344
- HOGENOM:   HBG338257
- OMA:   HAEEHLI
- ProtClustDB:   CLSK887888
- BioCyc:   BSUB:BSU33840-MONOMER
- GO:   GO:0006350
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21751; Mature: 21751

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALDIIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHH
TRMSQVVREMIDANIAEKVFEKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNRELSDLLQRDGLTPEAEEKVNQLLNELKEWLHYYDWLSRLIEFFESEEVFRYVPKTKE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CSSLK
CCCCC
>Mature Secondary Structure
MKKTALDIIEHAEEHLIEKIAENMHTFGMPSTVGRVLGIIYMNRKPMTLSELSEATGMSK
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHH
TRMSQVVREMIDANIAEKVFEKGVRKDLYDVEQDYYQTFISLFAANWTKVVSKNKVLYKK
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNRELSDLLQRDGLTPEAEEKVNQLLNELKEWLHYYDWLSRLIEFFESEEVFRYVPKTKE
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
CSSLK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377