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The map label for this gene is rghRB

Identifier: 16080420

GI number: 16080420

Start: 3457104

End: 3457523

Strand: Direct

Name: rghRB

Synonym: BSU33670

Alternate gene names: 16080420

Gene position: 3457104-3457523 (Clockwise)

Preceding gene: 16080419

Following gene: 255767766

Centisome position: 82.01

GC content: 49.05

Gene sequence:

>420_bases
ATGTCACCGTTCGGACAGCAATTACGGGAGCTGCGCCGCGCCCGCAAACTGACAGTGAATCAGCTTGCGGTGTACTCAGG
CATCAGCTCGGCCACCATTTCAAAAATTGAAAACGGCAAACGCGGGACGCCAAAACCCGCCACGATTAAAAAACTGGCAG
CCGTCCTGAAAGTGCCGTACGAAAACCTAATGGCCGCCGCAGGCCATATTCAGGCCTTTCCTGAAGAAATCCGCGAAGCA
TCTGAAGGCTATCAATCCGTTTATGAAATTTACCAGACGGCTGTCACACGCGGAGCGGAGCACCTCCCGATTTTCAATAG
TCAAAAATGGGAACATCTCTCAAAGCAGGATATTGAAAATCTCAGCAAATACTTCGATTTTTTGTCTTCAGAAGCAAAAA
AACGCGCCTCTTCCTCATAA

Upstream 100 bases:

>100_bases
ATTTGCTCATGCTGGATCATTATTTTTCGTTTATTTCAGATGAAGCGAAAAAACGGTCTGCTGATGACTGACTCTTGATA
GAAATGTGAGGCGATAGACC

Downstream 100 bases:

>100_bases
TCCCCTGTTTCTCTTTCTATATTTTATCAATCACGCTTGCATGCCCTCCCTCGTTATTTGCGTTATAATAGTGACAGACG
AGGTGAAAAGTATGAACCAA

Product: transcriptional repressor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MSPFGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENLMAAAGHIQAFPEEIREA
SEGYQSVYEIYQTAVTRGAEHLPIFNSQKWEHLSKQDIENLSKYFDFLSSEAKKRASSS

Sequences:

>Translated_139_residues
MSPFGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENLMAAAGHIQAFPEEIREA
SEGYQSVYEIYQTAVTRGAEHLPIFNSQKWEHLSKQDIENLSKYFDFLSSEAKKRASSS
>Mature_138_residues
SPFGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPYENLMAAAGHIQAFPEEIREAS
EGYQSVYEIYQTAVTRGAEHLPIFNSQKWEHLSKQDIENLSKYFDFLSSEAKKRASSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RGHRB_BACSU (O32237)

Other databases:

- EMBL:   AL009126
- PIR:   D70028
- RefSeq:   NP_391247.1
- ProteinModelPortal:   O32237
- SMR:   O32237
- EnsemblBacteria:   EBBACT00000001064
- GeneID:   938539
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33670
- NMPDR:   fig|224308.1.peg.3373
- GenoList:   BSU33670
- GeneTree:   EBGT00050000000710
- HOGENOM:   HBG727458
- OMA:   ARKLTVN
- ProtClustDB:   CLSK887886
- BioCyc:   BSUB:BSU33670-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR016759
- PIRSF:   PIRSF019364
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 15575; Mature: 15444

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPFGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH
ENLMAAAGHIQAFPEEIREASEGYQSVYEIYQTAVTRGAEHLPIFNSQKWEHLSKQDIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LSKYFDFLSSEAKKRASSS
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SPFGQQLRELRRARKLTVNQLAVYSGISSATISKIENGKRGTPKPATIKKLAAVLKVPY
CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCH
ENLMAAAGHIQAFPEEIREASEGYQSVYEIYQTAVTRGAEHLPIFNSQKWEHLSKQDIEN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
LSKYFDFLSSEAKKRASSS
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377