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The map label for this gene is rghRA

Identifier: 16080419

GI number: 16080419

Start: 3456667

End: 3457074

Strand: Direct

Name: rghRA

Synonym: BSU33660

Alternate gene names: 16080419

Gene position: 3456667-3457074 (Clockwise)

Preceding gene: 16080417

Following gene: 16080420

Centisome position: 82.0

GC content: 45.83

Gene sequence:

>408_bases
ATGGAAAGCTTTGGCGAACAATTACGGGCATTGCGTGAAGAGAGAAAGTTAACAGTCAACCAGCTGGCGACTTATTCAGG
CGTAAGCGCGGCCGGCATCTCCAGAATCGAAAACGGAAAACGGGGCGTTCCCAAACCTGCCACCATCAAAAAACTGGCAG
AGGCCTTAAAAATTCCTTATGAGGGGCTTATGTACAAGGCTGGTTACATCGAAGAAGTGCATGAAGCCAGGGCCCCTTAT
GAAACGAAGTGCAAGCTGCTTGAAAAAGCGGAGGCCTATGACCTGAAAAACCTTGCGCTTCTTGAGAACGAAAAGTGGCA
ATATCTCAATAAAGAAGATTTGCTCATGCTGGATCATTATTTTTCGTTTATTTCAGATGAAGCGAAAAAACGGTCTGCTG
ATGACTGA

Upstream 100 bases:

>100_bases
GCTTATGTTAACTTTTGTCAATACATTTCCAGTCTACCTATTCCCTTTAGTCAATAAACATACTAAAATATGAGTAACAG
TGAGGGACGGGGTGAGATAT

Downstream 100 bases:

>100_bases
CTCTTGATAGAAATGTGAGGCGATAGACCATGTCACCGTTCGGACAGCAATTACGGGAGCTGCGCCGCGCCCGCAAACTG
ACAGTGAATCAGCTTGCGGT

Product: transcriptional repressor

Products: NA

Alternate protein names: RapGH repressor

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEGLMYKAGYIEEVHEARAPY
ETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHYFSFISDEAKKRSADD

Sequences:

>Translated_135_residues
MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEGLMYKAGYIEEVHEARAPY
ETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHYFSFISDEAKKRSADD
>Mature_135_residues
MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPYEGLMYKAGYIEEVHEARAPY
ETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHYFSFISDEAKKRSADD

Specific function: Represses the expression of yvaM and both rapG and rapH. Binds directly to the promoter regions of yvaM, rapG and rapH

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RGHR_BACSU (O32236)

Other databases:

- EMBL:   U09819
- EMBL:   AL009126
- PIR:   C70028
- RefSeq:   NP_391246.1
- ProteinModelPortal:   O32236
- SMR:   O32236
- EnsemblBacteria:   EBBACT00000003389
- GeneID:   936180
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU33660
- NMPDR:   fig|224308.1.peg.3372
- GenoList:   BSU33660
- GeneTree:   EBGT00050000000710
- HOGENOM:   HBG727458
- OMA:   NQLATYS
- ProtClustDB:   CLSK887886
- BioCyc:   BSUB:BSU33660-MONOMER
- GO:   GO:0006350
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR016759
- PIRSF:   PIRSF019364
- SMART:   SM00530

Pfam domain/function: PF01381 HTH_3; SSF47413 Lambda_like_DNA

EC number: NA

Molecular weight: Translated: 15446; Mature: 15446

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPY
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCH
EGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHY
HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHH
FSFISDEAKKRSADD
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MESFGEQLRALREERKLTVNQLATYSGVSAAGISRIENGKRGVPKPATIKKLAEALKIPY
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCH
EGLMYKAGYIEEVHEARAPYETKCKLLEKAEAYDLKNLALLENEKWQYLNKEDLLMLDHY
HHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHH
FSFISDEAKKRSADD
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377