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The map label for this gene is lytT

Identifier: 16079944

GI number: 16079944

Start: 2955783

End: 2956508

Strand: Reverse

Name: lytT

Synonym: BSU28920

Alternate gene names: 16079944

Gene position: 2956508-2955783 (Counterclockwise)

Preceding gene: 16079945

Following gene: 16079943

Centisome position: 70.13

GC content: 41.32

Gene sequence:

>726_bases
ATGCTCAGGGTGTTAATAGTTGATGATGAGATGCTGGCAAGGGATGAACTGGCTTACTTGCTTAAGCGGACCAATGATGA
AATGGAAATCAATGAAGCGGAAAATATCGAATCCGCTTTTGACCAAATGATGGATCAAAAACCTGATTTGCTGTTTTTAG
ACGTTGATTTATCCGGAGAAAACGGTTTTGATATCGCAAAGCGATTGAAGAAAATGAAGCATCCTCCTGCTATTGTGTTT
GCGACAGCGTATGACCAGTATGCGCTCAAAGCGTTTGAGGTGGACGCTCTTGATTATTTAACCAAGCCTTTCGATGAAGA
AAGAATTCAGCAAACGCTGAAAAAATATAAAAAAGTCAATCGGGATATTGTAGAAACAGAGCAAAACAGCCATGCCGGCC
AGCACAAGCTCGCGCTATCTGTGGGGGAATCGATTGTGATTGTGGATACGAAGGACATTATCTATGCCGGAACAGAAGAT
GGTCATGTCAATGTAAAAACCTTCGATCATTCTTATACGGTCAGCGATACACTCGTTGTGATTGAGAAAAAGCTGCCGGA
TTCTGATTTTATCCGCGTCCATCGGAGCTTTGTCGTGAATACTGAATATATTAAAGAAATTCAGCCATGGTTTAATTCAA
CGTATAATCTGATCATGAAAGACGGATCGAAAATACCGGTCAGCCGGACATATGCGAAGGAATTGAAAAAGCTGCTCCAT
ATTTGA

Upstream 100 bases:

>100_bases
TTCGGACAGCAGGCTGCACTGCATATCAGCAGTGAGGTTCATAAAGGGACAGAGGTTTCCTTTCAAGTGCCAATGCAACA
GATGAAAGAGGGAGAAGAAC

Downstream 100 bases:

>100_bases
TGGGCGGCTTTTTGCATTTCAGCCATTTGATTCTGCAACTCAGACCCGCTATACGGCATGTTATCTTGTAAGCGCTTTAT
AACAGGGAATTCTTATTTAT

Product: two-component response regulator LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGENGFDIAKRLKKMKHPPAIVF
ATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVNRDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTED
GHVNVKTFDHSYTVSDTLVVIEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLH
I

Sequences:

>Translated_241_residues
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGENGFDIAKRLKKMKHPPAIVF
ATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVNRDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTED
GHVNVKTFDHSYTVSDTLVVIEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLH
I
>Mature_241_residues
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGENGFDIAKRLKKMKHPPAIVF
ATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVNRDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTED
GHVNVKTFDHSYTVSDTLVVIEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLH
I

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1788724, Length=252, Percent_Identity=35.3174603174603, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI87082052, Length=241, Percent_Identity=34.4398340248963, Blast_Score=135, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): LYTT_BACSU (P94514)

Other databases:

- EMBL:   Z75208
- EMBL:   AL009126
- PIR:   B69655
- RefSeq:   NP_390770.1
- ProteinModelPortal:   P94514
- EnsemblBacteria:   EBBACT00000000864
- GeneID:   936931
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU28920
- NMPDR:   fig|224308.1.peg.2895
- GenoList:   BSU28920
- GeneTree:   EBGT00050000000047
- HOGENOM:   HBG753323
- OMA:   IYVGLVD
- PhylomeDB:   P94514
- ProtClustDB:   CLSK887700
- BioCyc:   BSUB:BSU28920-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789
- SMART:   SM00850
- SMART:   SM00448

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 27834; Mature: 27834

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50930 HTH_LYTTR; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGE
CEEEEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
NGFDIAKRLKKMKHPPAIVFATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVN
CCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
RDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTEDGHVNVKTFDHSYTVSDTLVV
CHHHHCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCCCEEEEEEECCEEEECCEEEE
IEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLH
EEECCCCHHHHHHHHHHEECHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHC
I
C
>Mature Secondary Structure
MLRVLIVDDEMLARDELAYLLKRTNDEMEINEAENIESAFDQMMDQKPDLLFLDVDLSGE
CEEEEEECCHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCEEEEEEEECCC
NGFDIAKRLKKMKHPPAIVFATAYDQYALKAFEVDALDYLTKPFDEERIQQTLKKYKKVN
CCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
RDIVETEQNSHAGQHKLALSVGESIVIVDTKDIIYAGTEDGHVNVKTFDHSYTVSDTLVV
CHHHHCCCCCCCCCCEEEEECCCEEEEEECCCEEEECCCCCEEEEEEECCEEEECCEEEE
IEKKLPDSDFIRVHRSFVVNTEYIKEIQPWFNSTYNLIMKDGSKIPVSRTYAKELKKLLH
EEECCCCHHHHHHHHHHEECHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377