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The map label for this gene is ypoP

Identifier: 16079229

GI number: 16079229

Start: 2288194

End: 2288619

Strand: Direct

Name: ypoP

Synonym: BSU21700

Alternate gene names: 16079229

Gene position: 2288194-2288619 (Clockwise)

Preceding gene: 16079225

Following gene: 16079237

Centisome position: 54.28

GC content: 40.14

Gene sequence:

>426_bases
TTGAAAGTAAGAACACAGATGATGTACGATATGGAAACTTTACTCCGTAAAGTCTTTAAACAAATACGCAATGAAATCAA
TGAAATTTTAGATAAAGAGCTGTCGCGGAATGAATTCACCATTCTTCGAATCCTTAGTGAACAAGGGCCTAAAAAAGTCA
CTGAATTTGCGCCTATTTTAGAGGTATCGGCAAGCCACATTACGGCTGTGACCGATGCGCTGGTAGAAAAGGAATGGATT
ACGAGAATCAGATCGAAGGAAGACAGACGCATCATCCGCATTCATATCACTGAAGCGGGCGAAAAAGTCCTTCAGCACTT
TAACGAGAAAAAAACGGAATATTTCTTTAAACGCTTTGACTGCTACACTGATGCTGAACTTGCCACGTTAATCGAGCTCT
TCAGCAAACTTGATAAAAAACGGTGA

Upstream 100 bases:

>100_bases
ATTATATTATAGCATGTAAAAATAGAATGAAAATGATTCTGCTTTTCAATAAAATCTATAGGTTTTAAGCAATATGCTTA
TGTAATGGAGGTTCACAAAT

Downstream 100 bases:

>100_bases
AAAAAAGCACATACCGATATATAGGTATGTGCTTTTCGCAGTGCTTCACTTATTTTTCAGTAAACAGCTTCATTGCTTTC
CAGCGGCCATATCTATAATA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKVRTQMMYDMETLLRKVFKQIRNEINEILDKELSRNEFTILRILSEQGPKKVTEFAPILEVSASHITAVTDALVEKEWI
TRIRSKEDRRIIRIHITEAGEKVLQHFNEKKTEYFFKRFDCYTDAELATLIELFSKLDKKR

Sequences:

>Translated_141_residues
MKVRTQMMYDMETLLRKVFKQIRNEINEILDKELSRNEFTILRILSEQGPKKVTEFAPILEVSASHITAVTDALVEKEWI
TRIRSKEDRRIIRIHITEAGEKVLQHFNEKKTEYFFKRFDCYTDAELATLIELFSKLDKKR
>Mature_141_residues
MKVRTQMMYDMETLLRKVFKQIRNEINEILDKELSRNEFTILRILSEQGPKKVTEFAPILEVSASHITAVTDALVEKEWI
TRIRSKEDRRIIRIHITEAGEKVLQHFNEKKTEYFFKRFDCYTDAELATLIELFSKLDKKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YPOP_BACSU (P54182)

Other databases:

- EMBL:   L77246
- EMBL:   AL009126
- PIR:   F69939
- RefSeq:   NP_390053.1
- ProteinModelPortal:   P54182
- SMR:   P54182
- EnsemblBacteria:   EBBACT00000001189
- GeneID:   939103
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21700
- NMPDR:   fig|224308.1.peg.2176
- GenoList:   BSU21700
- GeneTree:   EBGT00070000031786
- HOGENOM:   HBG338829
- OMA:   RNEFFIL
- ProtClustDB:   CLSK887461
- BioCyc:   BSUB:BSU21700-MONOMER
- GO:   GO:0005622
- InterPro:   IPR000835
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00598
- SMART:   SM00347

Pfam domain/function: PF01047 MarR

EC number: NA

Molecular weight: Translated: 16867; Mature: 16867

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS01117 HTH_MARR_1; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVRTQMMYDMETLLRKVFKQIRNEINEILDKELSRNEFTILRILSEQGPKKVTEFAPIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
EVSASHITAVTDALVEKEWITRIRSKEDRRIIRIHITEAGEKVLQHFNEKKTEYFFKRFD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHC
CYTDAELATLIELFSKLDKKR
CCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKVRTQMMYDMETLLRKVFKQIRNEINEILDKELSRNEFTILRILSEQGPKKVTEFAPIL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHH
EVSASHITAVTDALVEKEWITRIRSKEDRRIIRIHITEAGEKVLQHFNEKKTEYFFKRFD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHC
CYTDAELATLIELFSKLDKKR
CCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377