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The map label for this gene is yokA

Identifier: 16079225

GI number: 16079225

Start: 2284771

End: 2286408

Strand: Direct

Name: yokA

Synonym: BSU21660

Alternate gene names: 16079225

Gene position: 2284771-2286408 (Clockwise)

Preceding gene: 16079222

Following gene: 16079229

Centisome position: 54.2

GC content: 34.13

Gene sequence:

>1638_bases
TTGGAGTTAAAAAACATTGTTAATTCTTACAACATCACAAATATTTTAGGGTATCTTAGACGTTCTCGTCAGGACATGGA
ACGAGAAAAAAGAACAGGTGAAGACACACTCACAGAACAAAAAGAACTTATGAATAAAATACTTACGGCCATTGAGATCC
CTTATGAATTAAAAATGGAGATTGGATCAGGAGAAAGCATTGATGGTCGACCTGTTTTCAAAGAATGTCTTAAAGATCTT
GAGGAAGGCAAATATCAGGCAATTGCTGTTAAAGAAATAACAAGACTTAGTCGTGGGAGTTATAGCGATGCAGGACAAAT
TGTTAACCTCCTTCAAAGCAAACGATTGATCATAATTACACCATATAAGGTTTATGACCCTAGAAACCCTGTTGACATGC
GCCAGATACGTTTTGAGTTATTTATGGCTAGAGAAGAATTTGAAATGACTAGGGAGCGTATGACAGGCGCTAAATACACT
TATGCAGCACAGGGAAAATGGATATCTGGACTGGCACCTTATGGATACCAATTAAACAAAAAGACGTCTAAACTAGATCC
AGTTGAGGATGAAGCAAAAGTAGTTCAATTAATTTTTAACATCTTTCTAAATGGGTTGAATGGAAAAGATTATAGCTATA
CAGCAATTGCTTCACATCTAACAAATTTACAAATCCCTACACCGTCAGGGAAAAAACGTTGGAATCAATACACAATCAAA
GCAATTCTCCAAAATGAAGTTTATATAGGAACTGTTAAATATAAGGTTAGAGAAAAAACAAAAGACGGAAAGAGAACAAT
TAGACCTGAAAAAGAACAAATTGTAGTACAAGATGCGCATGCTCCTATAATTGACAAAGAACAATTTCAACAATCACAAG
TAAAAATCGCAAACAAAGTTCCCCTTTTGCCAAATAAAGATGAATTTGAATTAAGTGAACTGGCCGGTGTTTGTACTTGC
TCAAAATGTGGTGAGCCTTTATCTAAATACGAATCTAAACGCATACGAAAAAACAAAGATGGAACTGAAAGCGTTTATCA
CGTTAAATCGCTCACATGTAAGAAAAATAAGTGTACGTATGTGAGATATAACGATGTTGAAAATGCAATTCTGGATTACC
TCTCTTCCTTAAATGACTTAAATGATAGTACTTTAACAAAACACATCAATTCGATGCTTTCAAAGTACGAAGACGACAAC
AGTAACATGAAAACAAAAAAGCAAATGTCTGAACACCTTTCACAAAAAGAGAAAGAGCTAAAAAACAAAGAGAACTTCAT
CTTCGATAAATATGAAAGTGGCATTTACAGTGATGAACTTTTTTTGAAGAGAAAAGCTGCATTAGATGAAGAATTTAAAG
AGCTCCAGAATGCAAAGAATGAGCTCAATGGATTACAAGATACACAATCAGAAATAGACAGTAATACAGTGAGAAACAAC
ATAAATAAAATAATTGACCAGTATCACATTGAATCAAGCTCAGAGAAAAAGAACGAGCTATTAAGGATGGTCTTAAAAGA
TGTTATTGTTAACATGACACAAAAAAGAAAAGGGCCTATACCAGCTCAATTTGAAATAACCCCTATCCTAAGGTTTAATT
TCATTTTTGACCTCACAGCCACTAATAGTTTCCACTAA

Upstream 100 bases:

>100_bases
CTTCAAATTATTGTATTGTTTTCGTATTCAATGTCAGATAAAATATTCTTAATTAAGTTTCTGTTTTGACATTAAACACA
AATAAAGAGGTGCTAAATTT

Downstream 100 bases:

>100_bases
GAAAAGTAGTAAGTATCTTAAAAAACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAGCTGTTATCTGA
AAAGCTGTTTCATCAAGCAA

Product: DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 545; Mature: 545

Protein sequence:

>545_residues
MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKMEIGSGESIDGRPVFKECLKDL
EEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIITPYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYT
YAAQGKWISGLAPYGYQLNKKTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIK
AILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKVPLLPNKDEFELSELAGVCTC
SKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTYVRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDN
SNMKTKKQMSEHLSQKEKELKNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNN
INKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTATNSFH

Sequences:

>Translated_545_residues
MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKMEIGSGESIDGRPVFKECLKDL
EEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIITPYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYT
YAAQGKWISGLAPYGYQLNKKTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIK
AILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKVPLLPNKDEFELSELAGVCTC
SKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTYVRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDN
SNMKTKKQMSEHLSQKEKELKNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNN
INKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTATNSFH
>Mature_545_residues
MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKMEIGSGESIDGRPVFKECLKDL
EEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIITPYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYT
YAAQGKWISGLAPYGYQLNKKTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIK
AILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKVPLLPNKDEFELSELAGVCTC
SKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTYVRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDN
SNMKTKKQMSEHLSQKEKELKNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNN
INKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTATNSFH

Specific function: Unknown

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 recombinase domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YOKA_BACSU (O32006)

Other databases:

- EMBL:   AL009126
- RefSeq:   NP_390049.1
- ProteinModelPortal:   O32006
- EnsemblBacteria:   EBBACT00000002950
- GeneID:   939105
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21660
- NMPDR:   fig|224308.1.peg.2172
- GenoList:   BSU21660
- GeneTree:   EBGT00050000001729
- HOGENOM:   HBG338109
- OMA:   IIKNEVY
- ProtClustDB:   CLSK2393385
- BioCyc:   BSUB:BSU21660-MONOMER
- InterPro:   IPR011109
- InterPro:   IPR006119
- Gene3D:   G3DSA:3.40.50.1390
- SMART:   SM00857

Pfam domain/function: PF07508 Recombinase; PF00239 Resolvase; SSF53041 Resolv_N

EC number: NA

Molecular weight: Translated: 63139; Mature: 63139

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00397 RECOMBINASES_1; PS00398 RECOMBINASES_2

Important sites: ACT_SITE 22-22

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKME
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
IGSGESIDGRPVFKECLKDLEEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIIT
ECCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEC
PYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYTYAAQGKWISGLAPYGYQLNK
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCEEECC
KTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIK
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKV
HHHHCCEEEEEEEEEEHHHCCCCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHCC
PLLPNKDEFELSELAGVCTCSKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTY
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCCEE
VRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDNSNMKTKKQMSEHLSQKEKEL
EEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
KNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNN
HHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
INKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECC
TNSFH
CCCCC
>Mature Secondary Structure
MELKNIVNSYNITNILGYLRRSRQDMEREKRTGEDTLTEQKELMNKILTAIEIPYELKME
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEE
IGSGESIDGRPVFKECLKDLEEGKYQAIAVKEITRLSRGSYSDAGQIVNLLQSKRLIIIT
ECCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEC
PYKVYDPRNPVDMRQIRFELFMAREEFEMTRERMTGAKYTYAAQGKWISGLAPYGYQLNK
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCEEECC
KTSKLDPVEDEAKVVQLIFNIFLNGLNGKDYSYTAIASHLTNLQIPTPSGKKRWNQYTIK
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
AILQNEVYIGTVKYKVREKTKDGKRTIRPEKEQIVVQDAHAPIIDKEQFQQSQVKIANKV
HHHHCCEEEEEEEEEEHHHCCCCCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHHHHCC
PLLPNKDEFELSELAGVCTCSKCGEPLSKYESKRIRKNKDGTESVYHVKSLTCKKNKCTY
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHEECCCCCEE
VRYNDVENAILDYLSSLNDLNDSTLTKHINSMLSKYEDDNSNMKTKKQMSEHLSQKEKEL
EEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
KNKENFIFDKYESGIYSDELFLKRKAALDEEFKELQNAKNELNGLQDTQSEIDSNTVRNN
HHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
INKIIDQYHIESSSEKKNELLRMVLKDVIVNMTQKRKGPIPAQFEITPILRFNFIFDLTA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECC
TNSFH
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377