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The map label for this gene is yplP

Identifier: 16079237

GI number: 16079237

Start: 2294286

End: 2295281

Strand: Direct

Name: yplP

Synonym: BSU21780

Alternate gene names: 16079237

Gene position: 2294286-2295281 (Clockwise)

Preceding gene: 16079229

Following gene: 16079238

Centisome position: 54.42

GC content: 42.77

Gene sequence:

>996_bases
ATGAATAGTGCACCAAAACTCAATACATTTCAACATCTAATCGGAGAACATCAAACTTTTCTGGAAGCGAAGCGAATCGC
CAAGCAGTTCTCGTTATCGGAGCTTCCTGTCTTAATAACAGGAAAAATCGGAACAGGCAAAAATCACTTCGCACATGCCA
TACACTTGGAATCTTCGAGAAGCAATGAACCGTTTATAAGCGTCAATTGCAGCACCCATTCGGAAGAAACCCTTATTCAT
GAGCTTTTTGGCCCTAACGGAAACACAGGTGTTTTTCAAAAAGCGGTACGAGGAACCCTTTTTCTTGATGATGTATGGCG
CATGCCTGCTTCTGTACAAGCTCAGCTGTTAAAAGCGCTTGATTCAGACACGGAGAAACCGCGAATGATCTGTGCTTCTG
CAGACCGATCCGTGGAACATACATTCAGGCAAGACTTATTCTACAGACTGAACATTTTAACGCTCACACTGCCCGAATTA
TCGGAACGAAAAAGCGATATTCCGCTTTTGACACAGCATTTTCTCTCAAATTCTGGTCAGCAATTGTTAATCGATCCCTC
CGTTTTTCCCGTGCTTGAGAAGCATGCATTTGAAGGCAATGTCAGGGAATTAAAAAACGCTGCAGATTATATGGCGGCAG
TATCAAGCGGGGGAACGATTCAGCCATATGACCTGCCGCCGTATATTAGAGGCACGATAGACGGAAAAACGTCGAAGAAA
AAAGCGAAACTGCTTACTTTAATGGAAAAAGCTGAGTTTTTGTTTATTTTGGAAACAATAAAAGTATTGAACGAAAAAGG
AGAACCTGCCAGCAGACGGATCATTTCTGAACACAGCAAAAATACCCAAACCTCGTTAACTCCTCAGCAGGTCAGAAGCC
GTCTCGACTATTTGGAGAAAAAAGATTATGTCACCAAAAGCCGCGGACGCGCAGGCACAAAAATTACCTTTGAGGGCTTG
AGCTTTATAGAGACGTTAAAAAATCAAATGATCTAG

Upstream 100 bases:

>100_bases
TCCTGCAGAGCCAAGAAAAAAGATGATCGTAAAATAAAGGGTGTTTTCAACCAAAAGGCATGATATAATGAAACCAATTA
GAACCAAAAGGAGCCAATTG

Downstream 100 bases:

>100_bases
CGATCGAAAGGAGAATGTACTTGTTTACAATCAAAGAAGAGATCGCCAATGCGATTACACACGGCATCGGTGTCCTCTTA
TCCATCCCAGCATTAGTGTT

Product: transcriptional enhancer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSRSNEPFISVNCSTHSEETLIH
ELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKALDSDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPEL
SERKSDIPLLTQHFLSNSGQQLLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKK
KAKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEKKDYVTKSRGRAGTKITFEGL
SFIETLKNQMI

Sequences:

>Translated_331_residues
MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSRSNEPFISVNCSTHSEETLIH
ELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKALDSDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPEL
SERKSDIPLLTQHFLSNSGQQLLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKK
KAKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEKKDYVTKSRGRAGTKITFEGL
SFIETLKNQMI
>Mature_331_residues
MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSRSNEPFISVNCSTHSEETLIH
ELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKALDSDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPEL
SERKSDIPLLTQHFLSNSGQQLLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKK
KAKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEKKDYVTKSRGRAGTKITFEGL
SFIETLKNQMI

Specific function: Unknown

COG id: COG1221

COG function: function code KT; Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain

Homologues:

Organism=Escherichia coli, GI1789233, Length=256, Percent_Identity=38.671875, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788550, Length=263, Percent_Identity=35.7414448669202, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790299, Length=244, Percent_Identity=36.0655737704918, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787583, Length=279, Percent_Identity=32.6164874551971, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788905, Length=230, Percent_Identity=35.6521739130435, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790437, Length=229, Percent_Identity=34.9344978165939, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081872, Length=230, Percent_Identity=35.6521739130435, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI87082117, Length=218, Percent_Identity=33.4862385321101, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789087, Length=285, Percent_Identity=28.7719298245614, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1786524, Length=274, Percent_Identity=31.3868613138686, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87082152, Length=225, Percent_Identity=31.5555555555556, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI87081858, Length=247, Percent_Identity=27.9352226720648, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789828, Length=229, Percent_Identity=29.6943231441048, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): YPLP_BACSU (P54156)

Other databases:

- EMBL:   L77246
- EMBL:   AL009126
- PIR:   C69938
- RefSeq:   NP_390061.1
- ProteinModelPortal:   P54156
- SMR:   P54156
- EnsemblBacteria:   EBBACT00000003901
- GeneID:   939094
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU21780
- NMPDR:   fig|224308.1.peg.2184
- GenoList:   BSU21780
- GeneTree:   EBGT00070000032085
- HOGENOM:   HBG338111
- OMA:   TKITLEG
- ProtClustDB:   CLSK887466
- BioCyc:   BSUB:BSU21780-MONOMER
- GO:   GO:0005622
- InterPro:   IPR003593
- InterPro:   IPR002078
- InterPro:   IPR013668
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00382

Pfam domain/function: PF08461 HTH_12; PF00158 Sigma54_activat

EC number: NA

Molecular weight: Translated: 37210; Mature: 37210

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00675 SIGMA54_INTERACT_1; PS00676 SIGMA54_INTERACT_2; PS00688 SIGMA54_INTERACT_3; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC
SNEPFISVNCSTHSEETLIHELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKAL
CCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHEEHHHHCCCHHHHHHHHHHH
DSDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPELSERKSDIPLLTQHFLSNSGQ
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCHHHHHHHCCCCC
QLLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKK
EEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHH
KAKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
KDYVTKSRGRAGTKITFEGLSFIETLKNQMI
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSAPKLNTFQHLIGEHQTFLEAKRIAKQFSLSELPVLITGKIGTGKNHFAHAIHLESSR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEEEECCCC
SNEPFISVNCSTHSEETLIHELFGPNGNTGVFQKAVRGTLFLDDVWRMPASVQAQLLKAL
CCCCEEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHCHHEEHHHHCCCHHHHHHHHHHH
DSDTEKPRMICASADRSVEHTFRQDLFYRLNILTLTLPELSERKSDIPLLTQHFLSNSGQ
CCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEEEEECCHHHCCCCCCCHHHHHHHCCCCC
QLLIDPSVFPVLEKHAFEGNVRELKNAADYMAAVSSGGTIQPYDLPPYIRGTIDGKTSKK
EEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCHHH
KAKLLTLMEKAEFLFILETIKVLNEKGEPASRRIISEHSKNTQTSLTPQQVRSRLDYLEK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
KDYVTKSRGRAGTKITFEGLSFIETLKNQMI
HHHHHHCCCCCCCEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377