Click here to switch to the map view.

The map label for this gene is yfnB

Identifier: 16077800

GI number: 16077800

Start: 804657

End: 805364

Strand: Reverse

Name: yfnB

Synonym: BSU07330

Alternate gene names: 16077800

Gene position: 805364-804657 (Counterclockwise)

Preceding gene: 16077801

Following gene: 16077799

Centisome position: 19.1

GC content: 43.22

Gene sequence:

>708_bases
ATGAAGCGATACCGCACTTTATTATTTGATGTAGATGATACCATCCTTGATTTTCAAGCGGCAGAAGCTTTAGCCCTGCG
TTTGCTGTTTGAAGATCAGAACATTCCTTTAACAAATGACATGAAGGCGCAGTATAAAACCATCAATCAAGGTCTCTGGA
GAGCCTTTGAAGAAGGTAAGATGACACGGGATGAAGTCGTAAACACACGTTTTTCCGCTTTGCTCAAGGAGTACGGTTAC
GAAGCGGACGGCGCTTTGCTTGAGCAAAAATACCGCCGCTTTCTTGAAGAAGGACATCAGCTTATTGACGGTGCATTTGA
TCTCATCTCAAATCTGCAGCAACAGTTTGATTTGTACATCGTGACAAACGGCGTGTCTCACACACAATATAAGCGTCTCC
GTGATTCAGGATTATTTCCATTCTTCAAGGACATTTTCGTTTCTGAAGACACCGGCTTCCAAAAGCCGATGAAGGAATAT
TTCAATTACGTGTTTGAACGGATTCCTCAATTTTCAGCAGAGCACACATTAATCATCGGGGATTCACTAACTGCTGATAT
CAAAGGCGGACAGCTCGCCGGGCTTGATACTTGCTGGATGAACCCTGACATGAAGCCGAATGTGCCAGAGATCATACCAA
CCTATGAGATTCGTAAGCTTGAAGAGCTATATCACATTTTGAATATCGAAAATACCGTCAGCTGCTAA

Upstream 100 bases:

>100_bases
AACAAATAATCTCTTTTCAGCCGGCGGTGCCTCACCCGCCGGCTTTTTCCTTTTTTTATGTGCTATACTTTGAATACATA
TGAGAAAGGGAGACACACAG

Downstream 100 bases:

>100_bases
TCAGGCTGACGGTATTTCTTTCATAAGAATCTTTTTTCCTCTTGATAAATTCTTCACCTTATGAATAATATGGTGGTATG
CTTTGGTTATATATGTAAGG

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGY
EADGALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEY
FNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIENTVSC

Sequences:

>Translated_235_residues
MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGY
EADGALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEY
FNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIENTVSC
>Mature_235_residues
MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGY
EADGALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEY
FNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIENTVSC

Specific function: Unknown

COG id: COG1011

COG function: function code R; Predicted hydrolase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. YjjG family

Homologues:

Organism=Escherichia coli, GI1790833, Length=225, Percent_Identity=28.4444444444444, Blast_Score=110, Evalue=6e-26,
Organism=Drosophila melanogaster, GI28571108, Length=245, Percent_Identity=24.4897959183673, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFNB_BACSU (O06480)

Other databases:

- EMBL:   D86418
- EMBL:   AL009126
- PIR:   E69814
- RefSeq:   NP_388614.1
- PDB:   3ED5
- PDB:   3I76
- PDBsum:   3ED5
- PDBsum:   3I76
- ProteinModelPortal:   O06480
- SMR:   O06480
- EnsemblBacteria:   EBBACT00000002789
- GeneID:   936095
- GenomeReviews:   AL009126_GR
- KEGG:   bsu:BSU07330
- NMPDR:   fig|224308.1.peg.733
- GenoList:   BSU07330
- GeneTree:   EBGT00050000000477
- HOGENOM:   HBG742904
- OMA:   YDLYIVT
- PhylomeDB:   O06480
- ProtClustDB:   CLSK886843
- BioCyc:   BSUB:BSU07330-MONOMER
- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR011951
- Gene3D:   G3DSA:3.40.50.1000
- TIGRFAMs:   TIGR01549
- TIGRFAMs:   TIGR02254

Pfam domain/function: PF00702 Hydrolase; SSF56784 SSF56784

EC number: NA

Molecular weight: Translated: 27381; Mature: 27381

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: ACT_SITE 10-10

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGK
CCCHHEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
MTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYI
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
VTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIG
EECCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC
DSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIENTVSC
CCCEEECCCCEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCC
>Mature Secondary Structure
MKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGK
CCCHHEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
MTRDEVVNTRFSALLKEYGYEADGALLEQKYRRFLEEGHQLIDGAFDLISNLQQQFDLYI
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEE
VTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIG
EECCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEC
DSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIENTVSC
CCCEEECCCCEECCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377