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The map label for this gene is ycdQ [C]

Identifier: 159901105

GI number: 159901105

Start: 5874478

End: 5875170

Strand: Direct

Name: ycdQ [C]

Synonym: Haur_4593

Alternate gene names: 159901105

Gene position: 5874478-5875170 (Clockwise)

Preceding gene: 159901104

Following gene: 159901106

Centisome position: 92.56

GC content: 45.31

Gene sequence:

>693_bases
ATGATGCTTTTATCTGTGTTAATTCCTTGCTACAATGAAGCAGCAACAATTGCAAACATGCTAGAGCGCTTGGCGCAAAT
TACCATCCCAATGCAATGGATCGCCGTCGATGATTGCTCACGTGATGATACCTATCAGGTTTTACAACAACTAACTGCAA
CCTACCCACACATGCAGGTTGTGCAACATCGCCAAAATCGTGGCAAGGGCGCGGCTATCCGCACTGCCTTAGCTCATGCC
ACGGGTAACATTGTGATTATTCAGGATGCCGACCTCGAATATGACCCTCACGATTTTTATGAGTTGATCAAACCAATTGA
AGCTGGTTTGATTAATGTCGTGTTTGGTTCGCGCTTTATGGGTCGGCATACGGGCATGTATTTCTGGAATGCTATTGGCA
ATAAAGGTCTCACCTTTTTAACCAATTTGCTGTTTAACTGTTGGATCTCCGATATGGAAACTTGTTACAAGGTGATGCGC
ACCGATATTATGCGCTCGATGAACTTGGTTTCCAATGATTTTCGGATTGAGGCAGAAATAACGGCGAAGGTTCTGATGCA
GGGTGAGCGAATTTTTGAAGTGCCAATTACATACTTGGGGCGTACTTACGAGGAAGGTAAGAAGATGCACCCCAAATATG
GCTTTTTGACGGTTTGGGCGTTATTCCGGCTGCGTTTGCTCGGTCGCCCATAA

Upstream 100 bases:

>100_bases
TTTTTAGCAGTGGTCGTCGCGGTGTTATTAATCCTGATTGTATTGGTTGTCGTTGTGCTCTAGCTGCATTCATGCCTGGG
GGTTAAATGTTTAGGACAAA

Downstream 100 bases:

>100_bases
CCACGGTATTTGCTCCTCTTACAGAAAAGGTGATACATATGCCAGTCGTTGCAGTTCTTGGCGCTCAATGGGGCGACGAG
GGCAAAGGTCGTGTTGTCGA

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MMLLSVLIPCYNEAATIANMLERLAQITIPMQWIAVDDCSRDDTYQVLQQLTATYPHMQVVQHRQNRGKGAAIRTALAHA
TGNIVIIQDADLEYDPHDFYELIKPIEAGLINVVFGSRFMGRHTGMYFWNAIGNKGLTFLTNLLFNCWISDMETCYKVMR
TDIMRSMNLVSNDFRIEAEITAKVLMQGERIFEVPITYLGRTYEEGKKMHPKYGFLTVWALFRLRLLGRP

Sequences:

>Translated_230_residues
MMLLSVLIPCYNEAATIANMLERLAQITIPMQWIAVDDCSRDDTYQVLQQLTATYPHMQVVQHRQNRGKGAAIRTALAHA
TGNIVIIQDADLEYDPHDFYELIKPIEAGLINVVFGSRFMGRHTGMYFWNAIGNKGLTFLTNLLFNCWISDMETCYKVMR
TDIMRSMNLVSNDFRIEAEITAKVLMQGERIFEVPITYLGRTYEEGKKMHPKYGFLTVWALFRLRLLGRP
>Mature_230_residues
MMLLSVLIPCYNEAATIANMLERLAQITIPMQWIAVDDCSRDDTYQVLQQLTATYPHMQVVQHRQNRGKGAAIRTALAHA
TGNIVIIQDADLEYDPHDFYELIKPIEAGLINVVFGSRFMGRHTGMYFWNAIGNKGLTFLTNLLFNCWISDMETCYKVMR
TDIMRSMNLVSNDFRIEAEITAKVLMQGERIFEVPITYLGRTYEEGKKMHPKYGFLTVWALFRLRLLGRP

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4503363, Length=214, Percent_Identity=29.9065420560748, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1787259, Length=104, Percent_Identity=31.7307692307692, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71999402, Length=216, Percent_Identity=27.7777777777778, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24585265, Length=214, Percent_Identity=28.0373831775701, Blast_Score=90, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 26493; Mature: 26493

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLLSVLIPCYNEAATIANMLERLAQITIPMQWIAVDDCSRDDTYQVLQQLTATYPHMQV
CHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHH
VQHRQNRGKGAAIRTALAHATGNIVIIQDADLEYDPHDFYELIKPIEAGLINVVFGSRFM
HHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
GRHTGMYFWNAIGNKGLTFLTNLLFNCWISDMETCYKVMRTDIMRSMNLVSNDFRIEAEI
HHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
TAKVLMQGERIFEVPITYLGRTYEEGKKMHPKYGFLTVWALFRLRLLGRP
HHHHHHCCCHHEECCHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMLLSVLIPCYNEAATIANMLERLAQITIPMQWIAVDDCSRDDTYQVLQQLTATYPHMQV
CHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHH
VQHRQNRGKGAAIRTALAHATGNIVIIQDADLEYDPHDFYELIKPIEAGLINVVFGSRFM
HHHHHCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
GRHTGMYFWNAIGNKGLTFLTNLLFNCWISDMETCYKVMRTDIMRSMNLVSNDFRIEAEI
HHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
TAKVLMQGERIFEVPITYLGRTYEEGKKMHPKYGFLTVWALFRLRLLGRP
HHHHHHCCCHHEECCHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]