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The map label for this gene is agaB34 [H]

Identifier: 159901086

GI number: 159901086

Start: 5852324

End: 5854342

Strand: Direct

Name: agaB34 [H]

Synonym: Haur_4574

Alternate gene names: 159901086

Gene position: 5852324-5854342 (Clockwise)

Preceding gene: 159901083

Following gene: 159901093

Centisome position: 92.21

GC content: 51.02

Gene sequence:

>2019_bases
ATGATCGGCTTCAATCATCGTCATTGGCGTTGGGGGCTGGTGCTAAGTTGCCTAAGTAGTCTGTTGGTTGGGGCGATGTT
GACCCAGCCAACCCGTGCTGCCGAGCCAGTTGCGGTTAATGCTGAGGGCTATACCACCCGCAGCTATGGTAGCGTCACGT
TTGAAGGCATTAATTACGCAGTGCAAAGTAATGTTGCTAACGAATATGTTCCGAGTACCACCCATTCGTATAGCGATCTG
GGCAGCTATTATTTGGTCAATAGTGATTATAGTTTGCCAAATGTGCCCAATATTACCAGCGGCGTATTGTGGTCAACTGG
CAACAAAAATCGCGGTTGGGCGATCAACAGCGAGTACGATATTCGGGCTTTGGTGCAGGCCAATGGCGGTTTGTATGCAC
CGTATCAGACCATGCCTGGCTATCAATTGGGGCCATGGAATGCTAGCACACCCTGTTGTGGCTGGACGTTGCAGCGCAAT
ACTACTGGTTTTTATATTCAGGCCGATGGCAAGGTGCGTGTGCCCAAAACGCCTGCTGCTGCCCAACAAACTTGGGATGC
CAACCAAAGCCTGACTGCCATCAACACCACCAACGATATTGTGGCTGTTACCGATGTGATGTTTCCTGGCGACGAGGATT
ATTACGCTGGCAACACCTATTTGCCGCGTTCAGCGGGCGTACTCACTGCCAAATATAAACATTACGACAATCGCAATACT
CACATTTATTGGGGCTTGAAGGGCCAGCATGTGCGTGATGTGGAAGATTGGGAAGCCGATGCGCCAGGCGGCAGCAAACG
TAAAATCTATACTGGCGGTTTCAAAATCGACGAAAGTGATAATGGTCAAGTCTGGGCTGGCATTTCGCATGGCAACGAAT
TTGTTGATCTTAATTTGCAGCCGAGCGTAACCGCCCAACAACTGTACAAAGTTGAGTTGTGGATTCAACGTCCAACAGGT
ATGGAATATTGGGGTGGTTTGAGCTACCAGCAGGGCGCTGATGGCAAGTGGCGAGCCTTTGGCGATGGTAGCCATGTGAC
TAATTGGGGCAACGGCACGTTTGGCTTGGTAGCAACCGCCTATCGCAATCGCAACGAACGCTTGTTGCTGGTTTATCGCG
CCTTGCCAGGTGGTGATAATCCGCCAACTCCCACCCCGCCACCACCGCCACCAACCAATGCTGCATCCTTTAATCTGATC
AATCGCAGTAGTGGGCTATGTTTGGATGTTGCTGGGGCGAATGCCGCCGATGGTACCAAAGTGCAGCAATGGACCTGTAA
TAACGCGACGGCGCAACAGTGGGAACTACGCTTGGCCGAAAGTGGCTATTATCAATTAGTTTCAAAAGCAACTGGCAAAT
GTTTAGATCTGGCGGCGTGGAGCACTACCGATGGTGGGATTGCCCATCAGTGGTCGTGCGGCAACAATCAATCGAATCAG
CAGTGGAATTTCCAAACCGTCAGCGATGGTTGGCTGCGAATTGCCAACCGCAACAGTAGCAAATATCTCTCGATCGTCTA
TGGTTCGGTGGATGCTGGGGCTGCGACTCACCAATGGCCTTGGCTGGGCAATCCCGACCAACAATGGCGGATTCAGCCTG
TGGGTACACTGCAAATCGCCAACAAAAATAGCAATAAATGTATTGATGTTGCCAATAATAATAGTGCTGATGGCACGAAT
ATTTTGCAATGGCCTTGCTACGCTGGCCTGGCCCAGCAATGGCAATTTCAACATAGCGATAATGGCTATTACAAGTTGCG
CCACCCCAGCAGTGGCAAAATGCTCTCGGTTTCGGGCGATTCAAATGCCGATGGGGCCAACATTCACCTCTGGACAGCGG
TGAGTAACCCGAGCCAACAATGGCGGCTTGAACTGCTCGACGATGGCTTTATGCGCTTTGTCAATCGGGCAACCGGCAAA
GTGGTTGATGTGGCTGGTGGCAGTAGCGCCGATAACGCCAACATTCAGCAATGGACGTGGAATAGTAGCAACGCCCAACG
CTTTAAACTGACGAATTAG

Upstream 100 bases:

>100_bases
TCTCTCGTCCCCACAGCTAAATCTAGCTTCTTTTGGTCATTGAAATAAGTTGTTGCCCCAGCCTATGATTAATTAAATAA
TGTTAATAAAAGGAGTTGTG

Downstream 100 bases:

>100_bases
TTTTTTTAACCACGAAGGGCAGATGGTTGAGCGCGGTTCCCCCTCGCCTCGCGTGCGGGAGAGGGGGCTAGGGGGTGAGG
GCATGAACATCGACTGGGCA

Product: Ricin B lectin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MIGFNHRHWRWGLVLSCLSSLLVGAMLTQPTRAAEPVAVNAEGYTTRSYGSVTFEGINYAVQSNVANEYVPSTTHSYSDL
GSYYLVNSDYSLPNVPNITSGVLWSTGNKNRGWAINSEYDIRALVQANGGLYAPYQTMPGYQLGPWNASTPCCGWTLQRN
TTGFYIQADGKVRVPKTPAAAQQTWDANQSLTAINTTNDIVAVTDVMFPGDEDYYAGNTYLPRSAGVLTAKYKHYDNRNT
HIYWGLKGQHVRDVEDWEADAPGGSKRKIYTGGFKIDESDNGQVWAGISHGNEFVDLNLQPSVTAQQLYKVELWIQRPTG
MEYWGGLSYQQGADGKWRAFGDGSHVTNWGNGTFGLVATAYRNRNERLLLVYRALPGGDNPPTPTPPPPPPTNAASFNLI
NRSSGLCLDVAGANAADGTKVQQWTCNNATAQQWELRLAESGYYQLVSKATGKCLDLAAWSTTDGGIAHQWSCGNNQSNQ
QWNFQTVSDGWLRIANRNSSKYLSIVYGSVDAGAATHQWPWLGNPDQQWRIQPVGTLQIANKNSNKCIDVANNNSADGTN
ILQWPCYAGLAQQWQFQHSDNGYYKLRHPSSGKMLSVSGDSNADGANIHLWTAVSNPSQQWRLELLDDGFMRFVNRATGK
VVDVAGGSSADNANIQQWTWNSSNAQRFKLTN

Sequences:

>Translated_672_residues
MIGFNHRHWRWGLVLSCLSSLLVGAMLTQPTRAAEPVAVNAEGYTTRSYGSVTFEGINYAVQSNVANEYVPSTTHSYSDL
GSYYLVNSDYSLPNVPNITSGVLWSTGNKNRGWAINSEYDIRALVQANGGLYAPYQTMPGYQLGPWNASTPCCGWTLQRN
TTGFYIQADGKVRVPKTPAAAQQTWDANQSLTAINTTNDIVAVTDVMFPGDEDYYAGNTYLPRSAGVLTAKYKHYDNRNT
HIYWGLKGQHVRDVEDWEADAPGGSKRKIYTGGFKIDESDNGQVWAGISHGNEFVDLNLQPSVTAQQLYKVELWIQRPTG
MEYWGGLSYQQGADGKWRAFGDGSHVTNWGNGTFGLVATAYRNRNERLLLVYRALPGGDNPPTPTPPPPPPTNAASFNLI
NRSSGLCLDVAGANAADGTKVQQWTCNNATAQQWELRLAESGYYQLVSKATGKCLDLAAWSTTDGGIAHQWSCGNNQSNQ
QWNFQTVSDGWLRIANRNSSKYLSIVYGSVDAGAATHQWPWLGNPDQQWRIQPVGTLQIANKNSNKCIDVANNNSADGTN
ILQWPCYAGLAQQWQFQHSDNGYYKLRHPSSGKMLSVSGDSNADGANIHLWTAVSNPSQQWRLELLDDGFMRFVNRATGK
VVDVAGGSSADNANIQQWTWNSSNAQRFKLTN
>Mature_672_residues
MIGFNHRHWRWGLVLSCLSSLLVGAMLTQPTRAAEPVAVNAEGYTTRSYGSVTFEGINYAVQSNVANEYVPSTTHSYSDL
GSYYLVNSDYSLPNVPNITSGVLWSTGNKNRGWAINSEYDIRALVQANGGLYAPYQTMPGYQLGPWNASTPCCGWTLQRN
TTGFYIQADGKVRVPKTPAAAQQTWDANQSLTAINTTNDIVAVTDVMFPGDEDYYAGNTYLPRSAGVLTAKYKHYDNRNT
HIYWGLKGQHVRDVEDWEADAPGGSKRKIYTGGFKIDESDNGQVWAGISHGNEFVDLNLQPSVTAQQLYKVELWIQRPTG
MEYWGGLSYQQGADGKWRAFGDGSHVTNWGNGTFGLVATAYRNRNERLLLVYRALPGGDNPPTPTPPPPPPTNAASFNLI
NRSSGLCLDVAGANAADGTKVQQWTCNNATAQQWELRLAESGYYQLVSKATGKCLDLAAWSTTDGGIAHQWSCGNNQSNQ
QWNFQTVSDGWLRIANRNSSKYLSIVYGSVDAGAATHQWPWLGNPDQQWRIQPVGTLQIANKNSNKCIDVANNNSADGTN
ILQWPCYAGLAQQWQFQHSDNGYYKLRHPSSGKMLSVSGDSNADGANIHLWTAVSNPSQQWRLELLDDGFMRFVNRATGK
VVDVAGGSSADNANIQQWTWNSSNAQRFKLTN

Specific function: Unknown

COG id: COG2730

COG function: function code G; Endoglucanase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ricin B-type lectin domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR008997
- InterPro:   IPR000772 [H]

Pfam domain/function: PF00652 Ricin_B_lectin [H]

EC number: =3.2.1.81 [H]

Molecular weight: Translated: 74015; Mature: 74015

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS50231 RICIN_B_LECTIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGFNHRHWRWGLVLSCLSSLLVGAMLTQPTRAAEPVAVNAEGYTTRSYGSVTFEGINYA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEECCCCCEEEECCCEE
VQSNVANEYVPSTTHSYSDLGSYYLVNSDYSLPNVPNITSGVLWSTGNKNRGWAINSEYD
EECCCCHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEECCCCC
IRALVQANGGLYAPYQTMPGYQLGPWNASTPCCGWTLQRNTTGFYIQADGKVRVPKTPAA
EEEEEEECCCEECCCCCCCCCEECCCCCCCCCCCEEEECCCEEEEEEECCEEECCCCCCH
AQQTWDANQSLTAINTTNDIVAVTDVMFPGDEDYYAGNTYLPRSAGVLTAKYKHYDNRNT
HHHCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEECCCCCCEEEEEEEECCCCCC
HIYWGLKGQHVRDVEDWEADAPGGSKRKIYTGGFKIDESDNGQVWAGISHGNEFVDLNLQ
EEEEECCCCCCCCCHHCCCCCCCCCCCEEEECCEEECCCCCCCEEEEECCCCEEEEEECC
PSVTAQQLYKVELWIQRPTGMEYWGGLSYQQGADGKWRAFGDGSHVTNWGNGTFGLVATA
CCCCHHHEEEEEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEEEE
YRNRNERLLLVYRALPGGDNPPTPTPPPPPPTNAASFNLINRSSGLCLDVAGANAADGTK
ECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCE
VQQWTCNNATAQQWELRLAESGYYQLVSKATGKCLDLAAWSTTDGGIAHQWSCGNNQSNQ
EEEEECCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
QWNFQTVSDGWLRIANRNSSKYLSIVYGSVDAGAATHQWPWLGNPDQQWRIQPVGTLQIA
EEEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
NKNSNKCIDVANNNSADGTNILQWPCYAGLAQQWQFQHSDNGYYKLRHPSSGKMLSVSGD
CCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHEEEEECCCCEEEEECCCCCCEEEECCC
SNADGANIHLWTAVSNPSQQWRLELLDDGFMRFVNRATGKVVDVAGGSSADNANIQQWTW
CCCCCCEEEEEEEECCCCHHEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEE
NSSNAQRFKLTN
CCCCCEEEEECC
>Mature Secondary Structure
MIGFNHRHWRWGLVLSCLSSLLVGAMLTQPTRAAEPVAVNAEGYTTRSYGSVTFEGINYA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEECCCCCEEEECCCEE
VQSNVANEYVPSTTHSYSDLGSYYLVNSDYSLPNVPNITSGVLWSTGNKNRGWAINSEYD
EECCCCHHCCCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCEEECCCCC
IRALVQANGGLYAPYQTMPGYQLGPWNASTPCCGWTLQRNTTGFYIQADGKVRVPKTPAA
EEEEEEECCCEECCCCCCCCCEECCCCCCCCCCCEEEECCCEEEEEEECCEEECCCCCCH
AQQTWDANQSLTAINTTNDIVAVTDVMFPGDEDYYAGNTYLPRSAGVLTAKYKHYDNRNT
HHHCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCEECCCCCCEEEEEEEECCCCCC
HIYWGLKGQHVRDVEDWEADAPGGSKRKIYTGGFKIDESDNGQVWAGISHGNEFVDLNLQ
EEEEECCCCCCCCCHHCCCCCCCCCCCEEEECCEEECCCCCCCEEEEECCCCEEEEEECC
PSVTAQQLYKVELWIQRPTGMEYWGGLSYQQGADGKWRAFGDGSHVTNWGNGTFGLVATA
CCCCHHHEEEEEEEEECCCCCHHHCCCCCCCCCCCCEEEECCCCCEECCCCCEEEEEEEE
YRNRNERLLLVYRALPGGDNPPTPTPPPPPPTNAASFNLINRSSGLCLDVAGANAADGTK
ECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCE
VQQWTCNNATAQQWELRLAESGYYQLVSKATGKCLDLAAWSTTDGGIAHQWSCGNNQSNQ
EEEEECCCCCCCEEEEEEECCCHHHHHHHCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
QWNFQTVSDGWLRIANRNSSKYLSIVYGSVDAGAATHQWPWLGNPDQQWRIQPVGTLQIA
EEEEEEECCCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEE
NKNSNKCIDVANNNSADGTNILQWPCYAGLAQQWQFQHSDNGYYKLRHPSSGKMLSVSGD
CCCCCCEEEECCCCCCCCCEEEECCHHHHHHHHEEEEECCCCEEEEECCCCCCEEEECCC
SNADGANIHLWTAVSNPSQQWRLELLDDGFMRFVNRATGKVVDVAGGSSADNANIQQWTW
CCCCCCEEEEEEEECCCCHHEEEEEHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEEE
NSSNAQRFKLTN
CCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA