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The map label for this gene is ymdB [C]

Identifier: 159901067

GI number: 159901067

Start: 5832370

End: 5832891

Strand: Direct

Name: ymdB [C]

Synonym: Haur_4555

Alternate gene names: 159901067

Gene position: 5832370-5832891 (Clockwise)

Preceding gene: 159901066

Following gene: 159901068

Centisome position: 91.9

GC content: 47.89

Gene sequence:

>522_bases
ATGAACCAACGCATCGAAATTTTGCAAGGCGATATTACCAAATTTGCTGGTGCAGCGATTGTTAATGCTGCTAATAGCTC
GTTGCTTGGTGGTGGTGGCGTTGATGGGGCGATTCATCGGGCAGCCGGCCCAAAACTTGGCTTGGAATGCCTTATGTTGG
GTGGTTGTAAAACTGGCCAAGCTAAAATGACCAAAGGCTATCGCTTACCTGTTCGCTCAATCATTCATACGGTTGGGCCA
GTTTGGCAGGGTGGTAATAAACACGAAGCCGAATTGCTGACCAACTGCTATCAACAGAGCCTCGAACTTGCTGCCAAACA
TCAGCTTGAAACGCTGGCCTTTCCAGCGATTAGCTGTGGAATTTATGGCTATCCAGTCGAATTAGCCGCCCCAATTGCGA
TCCAAACGATTGCCAACTTTCTTACGACCAATTCAATCCCCGAAAAAGTCAGCTTGATCTGTTTTGAAGCCACAGTTTAT
CAAGCCTATTGCGTCGCGTGGGAAGCCTATCAAGCCAAGTGA

Upstream 100 bases:

>100_bases
CAAATAATCAAGCAAATCTGTGCAATCTGTGGCTAAAACTTAACCTTCGTGTTCTTCGCGCTCTTCGTGGATTAGCAATT
AAACTGAGAGGGAATTTCCA

Downstream 100 bases:

>100_bases
TAGCTCATGCATCCAATTTGCTAAACCTCAATGTATATAGCTATATAAGGCTTAATCCACAATCAATACCAACCGCATAC
CAACGAACCAATTGATCAGT

Product: appr-1-p processing domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MNQRIEILQGDITKFAGAAIVNAANSSLLGGGGVDGAIHRAAGPKLGLECLMLGGCKTGQAKMTKGYRLPVRSIIHTVGP
VWQGGNKHEAELLTNCYQQSLELAAKHQLETLAFPAISCGIYGYPVELAAPIAIQTIANFLTTNSIPEKVSLICFEATVY
QAYCVAWEAYQAK

Sequences:

>Translated_173_residues
MNQRIEILQGDITKFAGAAIVNAANSSLLGGGGVDGAIHRAAGPKLGLECLMLGGCKTGQAKMTKGYRLPVRSIIHTVGP
VWQGGNKHEAELLTNCYQQSLELAAKHQLETLAFPAISCGIYGYPVELAAPIAIQTIANFLTTNSIPEKVSLICFEATVY
QAYCVAWEAYQAK
>Mature_173_residues
MNQRIEILQGDITKFAGAAIVNAANSSLLGGGGVDGAIHRAAGPKLGLECLMLGGCKTGQAKMTKGYRLPVRSIIHTVGP
VWQGGNKHEAELLTNCYQQSLELAAKHQLETLAFPAISCGIYGYPVELAAPIAIQTIANFLTTNSIPEKVSLICFEATVY
QAYCVAWEAYQAK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=155, Percent_Identity=52.258064516129, Blast_Score=160, Evalue=6e-40,
Organism=Homo sapiens, GI117968621, Length=156, Percent_Identity=51.9230769230769, Blast_Score=154, Evalue=3e-38,
Organism=Homo sapiens, GI207450721, Length=142, Percent_Identity=38.7323943661972, Blast_Score=104, Evalue=3e-23,
Organism=Homo sapiens, GI8923143, Length=142, Percent_Identity=38.7323943661972, Blast_Score=104, Evalue=4e-23,
Organism=Homo sapiens, GI154813199, Length=128, Percent_Identity=37.5, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI20336746, Length=163, Percent_Identity=28.8343558282209, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI226371718, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371716, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371714, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371712, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371710, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371706, Length=146, Percent_Identity=32.8767123287671, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI93141018, Length=173, Percent_Identity=26.5895953757225, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI93141020, Length=173, Percent_Identity=26.5895953757225, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI4758496, Length=173, Percent_Identity=26.5895953757225, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787283, Length=160, Percent_Identity=51.875, Blast_Score=176, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17538214, Length=155, Percent_Identity=45.8064516129032, Blast_Score=130, Evalue=4e-31,
Organism=Drosophila melanogaster, GI24586353, Length=172, Percent_Identity=30.8139534883721, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18425; Mature: 18425

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRIEILQGDITKFAGAAIVNAANSSLLGGGGVDGAIHRAAGPKLGLECLMLGGCKTGQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCC
AKMTKGYRLPVRSIIHTVGPVWQGGNKHEAELLTNCYQQSLELAAKHQLETLAFPAISCG
HHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IYGYPVELAAPIAIQTIANFLTTNSIPEKVSLICFEATVYQAYCVAWEAYQAK
CCCCCHHHHCHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNQRIEILQGDITKFAGAAIVNAANSSLLGGGGVDGAIHRAAGPKLGLECLMLGGCKTGQ
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCC
AKMTKGYRLPVRSIIHTVGPVWQGGNKHEAELLTNCYQQSLELAAKHQLETLAFPAISCG
HHCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
IYGYPVELAAPIAIQTIANFLTTNSIPEKVSLICFEATVYQAYCVAWEAYQAK
CCCCCHHHHCHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12125824 [H]